Listeria monocytogenes Lm60 (serotype 1/2a): IJ09_12365
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Entry
IJ09_12365 CDS
T03479
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lmom
Listeria monocytogenes Lm60 (serotype 1/2a)
Pathway
lmom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IJ09_12365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmom03400
]
IJ09_12365
DNA repair and recombination proteins [BR:
lmom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IJ09_12365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IJ09_12365
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_21
AAA_33
AAA_23
AAA_22
NACHT
nSTAND6
Viral_helicase1
DUF2972
DUF4459
Motif
Other DBs
NCBI-ProteinID:
AIL68551
UniProt:
A0A9P3QRB7
LinkDB
All DBs
Position
2430625..2433495
Genome browser
AA seq
956 aa
AA seq
DB search
MDKEKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMDKPDVDLIEGLSPAISIDQKTTSRNPRSTVGTVTEIHDYLRLLYARVGHP
VCPNHGIEITSQTIEQMVDRVLEYPEKTRIQIMAPIVSGKKGTHKKTIEEIKKEGYVRIR
VDGEIYDINDEIEIEKNKKHSIEIIIDRIVIKEGINTRLYDSIEAALRLADGYAVVDIMG
DKELLFSEHYACPYCGFSVGELEPRMFSFNSPFGACPTCDGLGTKLEVDVDTVIPDRSLS
LNEGAIIPWRPISSQYYPQMLASACKEFGIDMDTPLEKLSKEELDIIFNGSKDKEFYFEY
KNDFGMTRETWIPFEGILPNIERRYRETNSDFTRDQMAQYMTDLPCPSCKGYRLKEETLS
VKVNDHHIGQISEFSINEALAFFDGLELSEKETQIAAPIFKEVRARLGFLKNVGLDYLTM
SRAAGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLISTLQSMRDIGNT
LIVVEHDEDTMMAADYLIDIGPGAGEHGGRIVAAGTPEEVANNKNSITGDYLSGKKFIPV
PAKRRKGNGLELEIIGAKANNLKNVNAKIPLATFSCVTGVSGSGKSSLVNEVLRKALARK
LNRNHAKPGEHKEIKGIENLEKIINIDQSPIGRTPRSNPATYTGAFDDIRDLFASTNEAK
VRGYKKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCHGKRYNGETLDIRYKG
KNIAEVLEMTVEEGLEYFTNQPRIARKLQTIVDVGLGYIRLGQPATTLSGGEAQRVKLAS
ELHKRSNGKSFYILDEPTTGLHADDIGRLLKVLQRLVEENGDTVLVIEHNLDVIKQADYL
IDLGPEGGDGGGQIIATGTPEKIARSKKSYTGKYLKPILERDKERTEERIATAKKK
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
ttggataaagagaaaatagtaattcagggtgcaagagcccataacttaaaaaacattgat
gtagagattcctagagacaaattagtagttatgactgggctttcaggttcaggtaaatct
tcgcttgcttttgatacgatttatgcagaaggacaaagacgttatgtagagtctttgtcc
gcatatgcacgccaatttttagggcaaatggataaaccagatgtggatttaattgaagga
ttaagccctgccatttcgattgatcaaaaaacaacaagccgtaatccacgttccactgtt
gggacagttacagaaatccatgactatttgcgcttactttatgctcgtgttgggcatccg
gtttgtccaaatcacggtattgaaatcacttctcaaacaatcgaacaaatggtagatcgt
gttctagaatacccagaaaaaacacgtattcaaataatggctccaatcgtttctggtaaa
aaagggacacataagaaaactattgaggaaatcaaaaaagaagggtatgttcgaattcgt
gttgacggagaaatttatgatatcaatgacgaaattgaaatcgagaaaaacaaaaagcat
tcaatcgaaattatcattgaccgcattgtgattaaagaaggtatcaatactcgtttgtat
gactccattgaagcggctcttcgtttagctgatggttatgcggttgttgatataatgggc
gataaagaattattatttagtgaacactatgcgtgcccttattgtgggttttccgttggt
gaattagaaccaagaatgttctctttcaatagcccatttggcgcttgtccaacatgtgat
ggacttggcactaaacttgaagtcgatgtcgacacagttattcccgatagaagtctgtct
ctaaatgaaggtgctattattccttggcgcccaattagctcgcaatactatccacaaatg
ctagcttcggcttgtaaagagttcggaatagatatggatacacctcttgagaagctatcc
aaagaagaattagatatcatttttaatggatcaaaagacaaagaattttacttcgaatac
aagaatgatttcggcatgacacgtgaaacttggattccatttgaagggatacttccgaat
atcgaacgtcgctatcgtgaaacaaattccgatttcacacgtgaccaaatggcacaatat
atgacggatttaccttgcccatcttgcaaaggctatcgtctaaaagaagaaacactttcc
gttaaagtaaacgaccatcatattgggcaaatcagtgagttttctattaatgaagcactt
gctttcttcgatggcttagaactctctgaaaaagaaacacaaattgcagcgccaattttc
aaagaagttcgtgctagactaggcttcttaaaaaatgttgggctcgactacctaacaatg
agccgtgcagctgggacgctttctggtggtgaagcgcaacgaattcgacttgctacacaa
atcggttccagacttactggtgtactttatattttagatgaaccttccatcggtcttcat
caacgagataatgatcgtttaatcagcacactccaaagtatgcgtgacattggaaacacg
cttattgtcgttgagcatgacgaagatacgatgatggccgcagattatcttattgatatt
ggtccaggtgcaggagaacacggcggacgaattgttgcagccggaacaccagaagaagtt
gccaataataaaaattccatcactggtgactatctttcaggtaaaaaatttattccagtc
cctgctaaacgtagaaaaggtaacggactagaattagaaattattggtgctaaagcaaat
aatctcaaaaacgtaaatgcaaaaattccactagctactttttcctgtgtaactggagtt
tcaggttcaggtaaaagttcgttagtgaatgaagtactacgaaaagcgttagcgagaaaa
ctaaatagaaaccacgcaaaaccaggtgaacacaaagaaataaaaggcatcgaaaaccta
gaaaaaattatcaatattgaccaatcaccaatcggaagaacaccgagatcgaatccagct
acttatacaggagctttcgatgatattcgtgaccttttcgcaagtactaatgaagccaaa
gttcgtggttataaaaaaggtcgctttagttttaacgtaaaaggtggccgttgcgaggcg
tgtaaaggcgacggaatcatcaaaattgaaatgcatttcttgcctgatgtatatgtaccc
tgtgaagtttgtcatggaaaacgatacaatggtgagacgttagatattcgttataaaggc
aaaaatattgctgaagtattagaaatgactgtagaggaaggactagaatatttcaccaac
caaccaagaattgcgcgtaaacttcaaacaattgtagatgttggtcttggctatattcga
cttggacaacctgcaactacgctttcaggtggtgaagcgcagcgcgtcaaactagcttcg
gaacttcataaacgtagtaacggaaaatctttctatattctggatgaaccaactaccgga
ctccacgcagatgatattggacgtttactcaaagtattacaaagacttgtagaagagaat
ggcgatacagtacttgttattgagcataatcttgacgttatcaaacaagctgattacttg
attgatttaggtccagaaggtggcgatggtggcggtcaaattattgcaaccggcacacct
gaaaaaatcgctcgctcaaaaaaatcttatacaggtaaatacttgaaaccaattttagaa
cgcgataaagaacgcacggaagaacgaattgcaacagctaagaaaaaataa
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