Listeria monocytogenes Lm60 (serotype 1/2a): IJ09_12565
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Entry
IJ09_12565 CDS
T03479
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmom
Listeria monocytogenes Lm60 (serotype 1/2a)
Pathway
lmom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ09_12565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmom03019
]
IJ09_12565
03016 Transfer RNA biogenesis [BR:
lmom03016
]
IJ09_12565
Enzymes [BR:
lmom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IJ09_12565
Messenger RNA biogenesis [BR:
lmom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IJ09_12565
Transfer RNA biogenesis [BR:
lmom03016
]
Prokaryotic type
tRNA degradation factors
IJ09_12565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
RNase_II_C_S1
OB_cyt-4
OB_RNR_1st
S1_RRP5
SH3_VIII-1_N
Motif
Other DBs
NCBI-ProteinID:
AIL68590
UniProt:
A0A5M1R3F7
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All DBs
Position
2473287..2475668
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AA seq
793 aa
AA seq
DB search
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMKQVSKAPDV
VDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSP
LDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIF
ESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFD
FKEARVVVDEEGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDK
QKRQREKPIDKTRNFKSSSKNNRNKRRTGKSEDVKPKTERKDDEWYTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgcctgataaa
acatttgcgctagaagatttggaaatagaaatagctttaaataacgcggatgattttaaa
ttaatggtgaaagctttagtaaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacatttcgcgcacatgaa
cgaggttttggctttgttctcccagaagagaaagaaatggacgatatttttatcccacca
aatgaagtaaaagacgcaatgaatggcgacttagtttttgctacaattacgaaacgtaaa
ggcgataatttggcagaaggtacgattaagaaaattgtcgaacggaagacaacgcaaatc
gtcggaacttatatggaggacttagctggtactccaattgtgatgccggacgacaaacga
ctttttggtgaagtggaaattgatttagaagacggcttaaaaccagttgacgggcataaa
gttatcgttgaattgacggaatatgcaactggccatgcgcgtgcaagaggggttgttaag
tcaatcattgggcaccgcaatgacccgggagtggatattttatcgattattcataaacat
ggtatttcgattggcttccctgaagaggtaatgaaacaagtaagtaaagcgccggatgtg
gttgatgattcggatattggcaatcgccgtgatttgcgcgaccaaatgattattacgatt
gacggagcagatgctaaggatttagatgatgctgttacggtgaagcaacttccgaacggt
aactggaagctgggcgttcatattgctgatgtaacgcattatgtgacagaaggctcgccg
cttgatgtcgaagcgcaagaacgtggaacgagtgtttatttggttgaccgggtaattccg
atgttgccacataaactatcgaacggaatttgctcgcttaacccgcaagtagaccgtttt
accatgagttgtgaaatggaaatcgatcaagaaggtcatgtggttaaccacgaaattttt
gaaagtattattaaaacaacggaacgtatgacgtatacggatgtaaatgatattttagtc
gaaaaggatgaagctttacgcgaaaaatatgcgccaatcgttccaatgcttgaagcgatg
caaaatttagctgaaatccttcgccgtaaacgtgaaaaacgtggtgcgattgattttgac
tttaaagaagcacgtgtagtagtggatgaagaaggtcacccagaagcggtcgtgatgcgc
gaacgttcagcgggagagcatttaattgaagaatttatgcttgctgccaatgaaacagtt
gcagaacattttcactggatggatgtgccatttatttatcgtatccatgaagatccaaaa
gaagataaattagcacggttctttgaattcattacgaacttcggcttgattgtgaaagga
acagccaacgatattcacccagctgctttacaacaagtactagaagaagtaaaaggtaaa
ccggaagagatggttgtttcgactgttatgctgcgttcgatgcaacaagcgaagtatgac
acagtaagcgccggacactttggtttgtctactgatttctatacacatttcacgtcgcca
attcgtcggtacccggatttaatcgttcacaggttgattagagagtatttaattaacgga
gatgttcgtccggaaacgttagaaaaacgagctgaggagcttcctgagattgctgaacac
agctcaaaaatggagcgtcgcgccgttgaagcagagcgcgaaacagacgaactgaagaaa
acggaatttatggtcgacaaagtgggcgaacgtttcatcggaatcattagttcggtaacc
aattttggcttatttatcgaactaccgacgacgattgaaggccttgtccatgtgagcgca
atgaaaggcgattacttcaaattccatcaaaatcagttagcgatgattggcgaaagaaca
ggccaaatttatcgtatcggtgatgaagtggaagtcgaagtaactaaagtagacgtggat
gctcgtgaaatcgattttgcgcttcgtagtgaaggtaaaccaggtccagtgagcgacaaa
caaaaacgccaacgcgaaaaaccgattgataaaacgagaaacttcaagagtagctcaaaa
aataatcggaataaacgcagaactggtaaatcagaagacgtgaaaccaaaaacagaacgc
aaagatgacgaatggtatacaaaacctaaaaagaaaaagaagaaaaaacctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag
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