Listeria monocytogenes 6179 (serotype 1/2a): LM6179_00555
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Entry
LM6179_00555 CDS
T03159
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmoq
Listeria monocytogenes 6179 (serotype 1/2a)
Brite
KEGG Orthology (KO) [BR:
lmoq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmoq03016
]
LM6179_00555
Enzymes [BR:
lmoq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LM6179_00555
Transfer RNA biogenesis [BR:
lmoq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LM6179_00555
Prokaryotic type
tRNA splicing ligases
LM6179_00555
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
SRP_TPR_like
Motif
Other DBs
NCBI-ProteinID:
USB79230
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All DBs
Position
2804293..2805471
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AA seq
392 aa
AA seq
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MLTLKGKYNEAKVYTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTI
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEG
VVAPIHRGWVARSIGTLGVGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYIMAETILKAMKWNKAVVSAFDCVHNYIDLDNRMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLADVEDAMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttatacagataatgtggacgac
aataccatcgggcaaattattacgttgtgtaatcaaccgtttgcgaaggatagtaagatt
cggattatgcccgacacgcacggtggtaaaggttgtgtgattggaacgacaatgacaatt
caagataaaattgtaccgaatttggttggagtggacatcggttgtgggttgtatgtagtg
aaactaaaacctggcaagttaaaaatggattttgataagctagataaagttattcgcgaa
cgagtgccatctggaagcaaaacgcatgataagcctgtagatgaatttgatttggaaggt
gtagttgcgccaattcatcgcggctgggtagctagaagtatagggacgcttggtgtcgga
aaccattttattgaggtgaatcaaggttctgatggtatttaccttgtaatccatagtgga
agtcgggtgctgggtaaagaaatcgcggaatatcaccaagaggtagcttataaaagatta
gacatattgcgtaaagaattgaaattagacgcaactgctgcgaaaaaacgcggcaattta
gaaatggccaacaacttgaacggtgagcgcgagcaagtgaaattggattatgacttatct
tatgtgacgggctctgatttaaacaattatttaaatgacatggaaattgcacaaaaattc
gcagcgcgtaatcgttacatcatggcagaaactattttaaaagcgatgaagtggaataag
gcagttgtttcggcgtttgattgtgtgcataattacattgatctcgacaaccgcatgctt
agaaaaggtgcgacatctgctcagcttggcgaacaaattatcgttccacttaatatgcgt
gatggcagcattcttgcaacgggtaaaggaaatgcagattggaattactcggcgccacac
ggagcgggaaggatgctaagtcgctctaaagcaaaagcgcaaatcagtttagagagctat
caggcagcaatgaaagacgtttggactacttctgtttctaaaaaaacaattgatgaagct
ccaaaagcctataaatcagctaaacaactacttgctgatgtagaagatgcgatggagatt
caagaaataattaaaccgttatacaatttcaaagcatga
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