Listeria monocytogenes 6179 (serotype 1/2a): LM6179_01178
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Entry
LM6179_01178 CDS
T03159
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmoq
Listeria monocytogenes 6179 (serotype 1/2a)
Pathway
lmoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM6179_01178 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmoq03019
]
LM6179_01178 (cshA)
03009 Ribosome biogenesis [BR:
lmoq03009
]
LM6179_01178 (cshA)
Enzymes [BR:
lmoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LM6179_01178 (cshA)
Messenger RNA biogenesis [BR:
lmoq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LM6179_01178 (cshA)
Ribosome biogenesis [BR:
lmoq03009
]
Prokaryotic type
rRNA helicases
LM6179_01178 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
NABP
Motif
Other DBs
NCBI-ProteinID:
USB79810
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All DBs
Position
405357..406919
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AA seq
520 aa
AA seq
DB search
MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPM
IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN
PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL
FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAP
ELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTK
KRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLK
MLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGKGR
RSGGGSGGGSGSGGGGNRDRRGGGEQRSGGNKGNYSQKSK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaatcggatg
gggtttgaagaagcaacaccaatccaagaaaagacaattccactaggattagaaggtaaa
gacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtcttccaatg
attcacaaaattgaccaaaagagtaacaacgtacaagctttaattattgctccaacacgt
gaacttgcaatccaagtttcagaagagctttataaacttagctatgataaacatgtacgt
gtgctagcggtttacggtggtagtgatatcagccgtcaaatccgttcacttaagaaaaac
ccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgcacactg
aaactagatcacgtggaaacacttgtactagatgaagcagacgaaatgctaaacatgggc
ttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaactttacta
ttttctgcaacaatgcccgatccaattcgccgtatcggtgaacgtttcatgcatagccca
gaacttattcgtattaaagcaaaagaaatgactgcactattaatcgaacaattcttcgta
aaagtgcatgaaaaagaaaaatttgacgtattatctcgtttattagatgttcaagcacca
gaattagcaattgtttttggtcgtacaaaacgtcgtgtagacgaactatctcgcgcgctt
gatatgcgtggttacgtggctgaaggtatccacggtgacttaacgcaagcaaaacgtatg
agcgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagacgtagca
gcacgtggacttgatatttccggtgtaacacatgtatataactatgatattccacaagat
ccagaaagctatgttcaccgtattggtcgtactggtcgtgctggtaaagaaggtatggcg
attacattcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaactacgaaa
aaacgtatgcaaccacttcaagctcctacatgggacgaagcatttgcaggccaattacgc
gtagcaactgaaaaaattcaagaagcaattacagaagaaaacttagctgactacaaaacg
tttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatgcttaaa
atgttagcgaaagaaccagataaaactcctgtccatattactgaagagcgtccattacca
tcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggcaaaggtggcggctat
cgcggcggaagcggcaaaggcggaagctaccgtgatcgtaacaacagcggtaaaggtcgt
cgtagcggcggcggttccggtggtggaagcggctctggcggtggcggcaatcgtgatcgt
cgtggcggcggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaatctaaa
taa
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