Listeria monocytogenes SLCC2540 (serotype 3b): LMOSLCC2540_0217
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Entry
LMOSLCC2540_0217 CDS
T02242
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmot
Listeria monocytogenes SLCC2540 (serotype 3b)
Pathway
lmot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMOSLCC2540_0217 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmot03400
]
LMOSLCC2540_0217 (mfd)
Enzymes [BR:
lmot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMOSLCC2540_0217 (mfd)
DNA repair and recombination proteins [BR:
lmot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMOSLCC2540_0217 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
CBY74858
LinkDB
All DBs
Position
215458..218997
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
FPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERA
EKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIESKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgagcggtcttaaatgcg
ctggatgaaaaagaaaaagcacaacttgtcacagggctcacaggttcttcacgtgcgtta
tttgcaagcgtggtagaaggtgcgtcaaagcgtccggttgtatttgttacgcacaattta
taccatgcgcaaaaattatatgatgatttactttctttaatggatgtcgatcgactattt
ttatatccagcagatgaactgatttcttctgagttgagtatctctagcccggaacttcgc
ggtcaacgcgtggaagcgctcgacttcttactatccggaaaaccggggatagtcattgtg
ccagttgctggtctcagaaaaatgcttccaccagtatcgctttggaaacatttcaacata
tccattgtagagggcgaagaaattgatccagatgtactacgccaaaaactagtgacaatg
ggctacacaatgagcggaatggtaaatacgccgggagaattcagtgttcgcggcgggatt
attgatatttatccaattacagaagaatttccaattagaatagaactttttgacactgaa
gtagattctcttcgtttctttgatgtggaaacgcagcgctcgacaacccgcgtggaagaa
ttccgcctactgcctgcaactgaaatcattttagatcaaagctattatccggatatcgtc
aaacgcttagaaaagaaaatgacacatactttaaatgaattgaaagaaaacgaggataaa
caagcgctcgttgaaaatttagaagaagatcttgaaatgcttcgttctggcgtgaaacca
gacatgttctttaaatatatcggtctggcttatcctgacccagcctcgctttttgattat
tttccaaaaaacacggcaattttgcttgatgaatttgggcggattttagaaacggaagaa
agcttggagcgggaagaagcggagtggcaaacagaaacattaagtcgaatggaaacggtt
cgcgacgtgcaagtaagtcattctttcaaaaagctattagaagcaaatcactcgccgaaa
atatacttatcccttttccaaaaacaaatggcgagcatgcgcgtctcgaaaacaactaac
atcgtctataaacaaatgcagcaatttcatggccaaatgaatgtgttgaaaaccgagcta
gaaagttggcataagaataattatgccgttgttattttagccccaaaccttgagcgcgcc
gaaaaaatgcaacaaactttaactgactacgatatggaaagtacgattttgaaaaaagaa
tcggatgtgccgaaatatggaatggttcagtttgtcatcggaacgttccagaatggtttt
gaacttccattagctaaagtagcgattataagtgaaaccgaactattcaataaaaaaatc
aaaaaagtgaagaagcgccaaaagctctcgaatgcagaacgaatccaaagttactctgaa
ttaaaagtaggtgactacgtggttcatgtgaaccatggtatcgctcgttatgttggcatg
gaaacgctagatatcaacggtgtgcataaagattacttgctacttgtttaccaaggagag
gataaactatttatccccgtcgatcaacttgatttagttcaaaaatatgttggtgcagaa
ggtaaatcaccaagattaaacaaacttggtggcgctgaatggaagcgagtgaagaagaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatacgccgaacgtgaa
gctgaaaaaggctatgcgtttagtgcggatgatgaaatgcagcgcgaatttgaagaggct
ttcccgtatcaagaaaccgaagaccaactgcgctcgatttcagaaatcaaaaaagatatg
gaacgaccgcgcccgatggaccgtctgttggttggagatgttggttacggaaagaccgaa
gtggccttacgagctgctttcaaagcaattatggatggcaagcaagtcgccttcttagtt
ccgaccaccattttagcgcaacaacattttgaaacaatgaaagaacggttccaaggtttc
ccaatagaaatcggacttttaagccgtttccgaacaaagaaacaacaaacagaaacatta
aagggtatgaaaaacggcacagtcgacgttgttgttggtacccatcgtttattatcaaaa
gatgtggagtatcaagatttaggcttattaattgtcgatgaagaacaacgattcggcgta
actcataaagaaaaaatcaaacaaatgcgttccaaaatagacgtactaacacttactgca
acaccaattccaagaactttacacatgtccatgctcggcgttcgtgacctctctgttatc
gaaactccgccagcgaatcgttttccagtgcaaacatatgtggcggagcagaataacgtt
ttagttcgagaagcaattgaacgtgaactagcgcgcgacggacaagtttattatctatat
aatcgagtggaatccattacgcaaaaagcagatgaaatttctgcgatggttcctgatgct
agggtcgccactgcgcacggacagatgggtgaatcggaattagagtctgttattttaagt
ttccttgaaggagaattcgatgtacttgtaacgacgaccatcattgaaaccggcgtagac
attccaaacgttaatacactctttgttcaagatgctgatcggatgggtctttcacaactt
tatcagttgcgcggacgagtagggcgttggaacagaatcgcctacgcttacttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaagaattc
actgaattaggttcaggtttcaaaatagcgatgcgtgacttatctattcgtggagccggt
aatatcctcggagcgcaacaacatggctttatcgattcagtcgggtttgatctctactcg
caaatgcttaaggaagcaattgagtcgaaaaagccaaaagaagaacaaaaacaaattgtc
cctgttgaaattgatatccaagcagacgcctatattccggaatattacattacagacggc
cgtcagaaaatcgagatgtacaaacgcttccgcaatattgaaacgttaagcgaactcgaa
gatttacaaagcgatatgattgaccgttttggtgaatatccagaagaagtagaatatcta
ttcacaatgacagaactcaaagtccatgcactcgaagttggcattgagtccgtcaaacaa
gaacaaaataaaattaccatgctattttcagaaagcggaacagcaggcattcgcggagat
atcgtcatgcaaatcattggcgaatttggccgaatggtcggtgtgggtatggaaggtaca
caactaaaaatcacgataaacgtccaaaataaacctttaaaagaatggttataccaagtc
aaaagtttggctgaaaaacttcgcggagccatgaaagaaagagcatctgcagaaaattga
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