Listeria monocytogenes J1-220 (serotype 4b): LM1816_08955
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Entry
LM1816_08955 CDS
T02801
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmoz
Listeria monocytogenes J1-220 (serotype 4b)
Brite
KEGG Orthology (KO) [BR:
lmoz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmoz03016
]
LM1816_08955
Enzymes [BR:
lmoz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LM1816_08955
Transfer RNA biogenesis [BR:
lmoz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LM1816_08955
Prokaryotic type
tRNA splicing ligases
LM1816_08955
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
SRP_TPR_like
Motif
Other DBs
NCBI-ProteinID:
EGF38902
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All DBs
Position
314737..315915
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AA seq
392 aa
AA seq
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MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGTTMTI
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEG
IVAPIHRGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMR
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
PKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgctaacattaaaaggaaaatataacgaagcgaaagtttttacagataatgtggacgac
aataccatcgggcaaattattacgctgtgtaatcaaccgtttgcgaaggatagtaagatt
cggatcatgcccgacacgcacggtggtaaaggttgtgtgattggaacgacaatgacaatt
caagataaaattgtaccgaatttggttggagtagacatcggttgcggactgtatgtagtg
aaactaaaacctggcaagttaaaaatggactttgataagctagataaagttattcgcgaa
cgagtgccatctggaagcaaaacacacgataagcctgtagatgaatttgatttggaaggt
atagttgcgccaattcatcgcggctgggtagctagaagtatagggacgcttggtggcggg
aaccattttattgaagtgaatcaaggctctgatggtatttaccttgtaatccatagtgga
agtcgggtgcttggtaaagaaattgcagaataccaccaagaagtagcttataaaagatta
gacatattgcgtaaagaattgaaattagacgcaactgctgcgaaaaaacgcggcaattta
gaaatggccaacaacttgaacggtgagcgtgagcaagtgaaattggattatgacttatcc
tatgtgacgggctctgatttaaacaattatttaaatgacatggaaattgcacaaaaattt
gcagcgcgtaatcgttacgtcatggcagaaactattttaaaagcgatgaagtgggataaa
gcagttgtttcagcgtttgattgtgtgcataattacattgatattgataaccacatgctt
agaaaaggtgcgacatctgctcagcttggagagcaaattatcgttccacttaatatgcgc
gatggcagcattcttgcaacgggtaaaggaaatgcagattggaattactcggcgccgcac
ggggcgggaaggatgctaagtcgttctaaagcaaaagcgcaaatcagtttagaaagctat
caggcagcaatgaaagacgtttggactacttctgtttctaaaaaaacaattgatgaagct
ccaaaagcctataaatctgctaaacaattacttgctgatgtagaagatacgatggagatt
caagaaataattaaaccgttatacaatttcaaagcatga
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