Listeria monocytogenes J1-220 (serotype 4b): LM1816_17825
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Entry
LM1816_17825 CDS
T02801
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lmoz
Listeria monocytogenes J1-220 (serotype 4b)
Brite
KEGG Orthology (KO) [BR:
lmoz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmoz03032
]
LM1816_17825 (topA)
03400 DNA repair and recombination proteins [BR:
lmoz03400
]
LM1816_17825 (topA)
Enzymes [BR:
lmoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LM1816_17825 (topA)
DNA replication proteins [BR:
lmoz03032
]
Prokaryotic type
DNA Topoisomerases
LM1816_17825 (topA)
DNA repair and recombination proteins [BR:
lmoz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LM1816_17825 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
JHBP
DUF2996
Toprim_2
Lar_restr_allev
Toprim_3
HypA
Motif
Other DBs
NCBI-ProteinID:
AGR29651
LinkDB
All DBs
Position
1372722..1374800
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AA seq
692 aa
AA seq
DB search
MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTEHDYEPRYITIRGK
GPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVVFNEITKEAVKE
SFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREK
EINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKLSTADDVKEVMSAIKGKSFDVTD
VTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMR
TDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVK
EFLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIKFHGFMKVYVE
SNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTY
SPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGE
VEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACS
RFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERAC
PKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcagattatttagtgattgtagagtcacctgcaaaagcaaaaacaattgaaaagtat
ttaggtaagaaatttaaagtgaaagcctcaatgggacatgttcgtgacttacctaagagt
caaatgggtgtagacacagagcatgactacgaacctcgttatattacgattcgcggaaaa
ggccctgttttaaaagaattaaaacaagcagccaaaaaagcgaaaaaagtctatctcgca
gccgatccagaccgcgaaggagaagcaattgcatggcacttagccaatagcctagagtta
gatcaatcagacaaactacgtgtagtatttaacgaaataacgaaggaagcagtaaaagaa
tctttcaaaacaccacgtaaaattgacatggatttagtcaatgcgcaacaagcacgcaga
attttggaccgtttagttggatataatatcagccctattctatggaaaaaagtgaagaaa
ggtttgagtgcggggcgtgttcagtctatcgcacttcgaatcattattgatagagaaaaa
gaaatcaataatttcaaacctgaagaatactggacaattgacggtaacttccttaaaggg
aagaaaaaattccaagccaatttttatggtgtaaatggtaaaaagaaaaagctttccact
gcagatgatgtaaaagaagtaatgtctgcaataaaaggaaaatcatttgacgtaacagat
gtaacgaaaaaagaaagacttagaaatccagctgcaccattcactacttcaagtttgcaa
caagaagcagctcgaaaactaaattatcgtacaagaaaaacaatgatgcttgcccaacaa
ttgtatgaaggaattacacttggtaaacaagggacagtcggcttaattacgtatatgcgt
acagactccactcgtattgccgattccgctatactagaagcaagcaattacattaaagaa
acctatggacccgaattttctcgtaatcataaacgttcagataaaaatgctaaaggtgct
caagatgcccatgaagcaatcagacctacaagtgcaatgagaagtcctcaagaagtaaaa
gaatttttaacacgggaccaacttcgcttatatcgtttgatttgggaaagatttatcgcg
agccaaatgacgccagcagttcttgatacaatgcgcgttgacttagacaacaatggcgtg
aacttcagagcaaatggctctaaaattaaattccacggcttcatgaaagtctatgtagaa
agtaacgatgataatacggaagaaaaagaaaatatcttaccagatttgaaaaaaggagat
aaggtacagtccgaatcactcgaacagcgacaacatttcacacagccacctccacgttac
acagaagctagattagtaaaaacgctcgaagaaattggtattggtcgaccatcaacttat
tcgccgacactcgacacaattcagcgcagaaattatgtttctttaacgaataaacgcttt
attccaactgaattaggtgaaatcgttaatgaaatgattgaagaatatttcccagaaatt
ttagatgttaaattcactgccaatatggaaagtgagctcgatgaagtagagcacggagaa
gtcgaatgggtgaaagtcattgatgaattttataaacgatttgaaccaaatgttataaaa
gcagatgcagaaatggaaaaaatcgagattaaagatgaaccagccggaattgactgtgat
ctttgtggagctccaatggtttacaaaatgggtaaatacggtaagttcctagcttgtagc
agatttcctgattgtcgtaatacgaaagcaatcgtgaaagaaatcggcgttacgtgtccg
aaatgtgagaaaggacatgtaatagaaagaaaaagtaagaaaaagcgtattttttacggt
tgtgatcgttatccagattgtgactatgtatcatgggataaaccggtcgaacgggcttgt
ccgaaatgtgagaaacgagcattagtcgagaagaaattgaaaaaaggtgtacaagtacaa
tgtacaaattgtgattacaaagaatcaacccaacaataa
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