Listeria monocytogenes J1-220 (serotype 4b): LM1816_17850
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Entry
LM1816_17850 CDS
T02801
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmoz
Listeria monocytogenes J1-220 (serotype 4b)
Pathway
lmoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM1816_17850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmoz03019
]
LM1816_17850
03009 Ribosome biogenesis [BR:
lmoz03009
]
LM1816_17850
Enzymes [BR:
lmoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LM1816_17850
Messenger RNA biogenesis [BR:
lmoz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LM1816_17850
Ribosome biogenesis [BR:
lmoz03009
]
Prokaryotic type
rRNA helicases
LM1816_17850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AGR29655
LinkDB
All DBs
Position
1345734..1347146
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AA seq
470 aa
AA seq
DB search
MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQ
IEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHI
VVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSA
TMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITENPDSAIIFC
NTKNQVDELTDLLDVKVSKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVS
LVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKKRKPT
VIEVKANEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEG
ITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttaaaattaagtgaagaaattaaaagagcgattaatgaactaggatataca
gaagcaacacccgttcaaaaagcggtaattccagttgccttaacaggagaagatattgtt
gctaaatcacaaactggtagtgggaaaacagcagcattcgctattcccattgcagaacag
attgaatgggaagaaaataagccacaagcactaatcatcgttccaacacgagaacttgca
atgcaagtcaagacagaatgtacgaatattggacgatttaaacgtgtcaaagctgcagca
atatacggacaatcaccatttgcgaaacaaaaattagaactaagccaaaaaaatcatatc
gtcgttggtacgccaggtcgcctactggaccatattgaaaaaggatcactgaatgtcgac
aaggttgcccatttagttttagatgaagtagatgaaatgttaagcatgggatttattgat
caagtcgaagatattcttagccgtttaccaaaacagcgccaaaatctatttttctcagca
actatgccagaagaaatgcaagatttgattaaacgctaccaagatgatccaatggtaatc
gaaatggcatcggaaaaaacaaaccctatcttccacgtggagatgcaaacagataataaa
gaaaaaacgctaaaagatgttttgattacagaaaatccggatagcgcaataatattttgc
aatacgaaaaatcaagtcgatgaactcaccgatttacttgatgtaaaagttagtaaaatt
catgggggtttaagacaagaagaccgtttccgagcaatggatgattttaaaagtggcaaa
tcccgtttcttaattgcgacagatgtggcagggcgcggaatagatgtggataatgtatcg
ttagtcattaactacgatttaccaattgaaaaagaaaattatgtacatcgtatcggtcgt
actggtcgcgctggcaaaagtggtaaagctattagtttcgtgaaaacaaatgaaaatcca
cttttgcgtgacatagaagaaatgctcgatgttacaatcgaaaaaaaacgtaaaccgaca
gtgatagaagtgaaagctaacgaagaagctttccgcaaaaaacaacaaaagcgcccaaca
atcaaaaaagctcgtggggaaaaattaaataaaaacattatgaaactgtattttaatggt
ggaaaaaagaaaaaaattcgtgcagtagattttgttggaactatttctaaattagaagga
attacggccgaagatatcggaattattacgattgaagaccatgtttcttttgttgaaatt
ttaaatggaaaaggtccggcagtactggaaatgatgcgctctcgtaaagtaaaaggtaga
cgcctgaaagtaaacgaggccagaaaacgataa
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