Listeria monocytogenes 07PF0776 (serotype 4b): MUO_01215
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Entry
MUO_01215 CDS
T02040
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmp
Listeria monocytogenes 07PF0776 (serotype 4b)
Pathway
lmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUO_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmp03400
]
MUO_01215
Enzymes [BR:
lmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUO_01215
DNA repair and recombination proteins [BR:
lmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUO_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
AFH78807
LinkDB
All DBs
Position
221562..225101
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
FPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERA
EKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgagcggtcttaaatgcg
ctggatgaaaaagaaaaagcacaacttgtcacagggctcacaggttcttcacgtgcgtta
tttgcaagcgtggtagaaggtgcgtcaaagcgtccggttgtatttgttacgcacaattta
taccatgcgcaaaaattatatgatgatttactttctttaatggatgtcgatcgactattt
ttatatccagcagatgaactgatttcttctgagttgagtatctctagcccggaacttcgc
ggtcaacgcgtggaagcgctcgacttcttactatccggaaaaccggggatagtcattgtg
ccagttgctggtctcagaaaaatgcttccaccagtatcgctttggaaacatttcaacata
tccattgtagagggcgaagaaattgatccagatgtactacgccaaaaactagtgacaatg
ggctacacaatgagcggaatggtaaatacgccgggagaattcagtgttcgcggcgggatt
attgatatttatccaattacagaagaatttccaattagaatagaactttttgacaccgaa
gtagattctcttcgtttctttgatgtggaaacgcagcgctcgacaacccgcgtggaagaa
ttccgcctactgcctgcaactgaaatcattttagatcaaagctattatccggatatcgtc
aaacgcttagaaaagaaaatgacacatactttaaatgaattgaaagaaaacgaggataaa
caagcgctcgttgaaaatttagaagaagatcttgaaatgcttcgttctggcgtgaaacca
gacatgttctttaaatatatcggtctggcttatcctgacccagcctcgctttttgattat
tttccaaaaaacacggcaattttgcttgatgaatttgggcggattttagaaacggaagaa
agcttggagcgggaagaagcggagtggcaaacagaaacattaagtcgaatggaaacggtt
cgcgacgtgcaagtaagtcattctttcaaaaagctattagaagcaaatcactcgccgaaa
atatacttatcccttttccaaaaacaaatggcgagcatgcgcgtctcgaaaacaactaac
atcgtctataaacaaatgcagcaatttcatggccaaatgaatgtgttgaaaaccgagcta
gaaagttggcataagaataattatgccgttgttattttagccccaaaccttgagcgcgcc
gaaaaaatgcaacaaactttaactgactacgatatggaaagtacgattttgaaaaaagaa
tcggatgtgccgaaatatggaatggttcagtttgtcatcggaacgttccagaatggtttt
gaacttccattagctaaagtagcgattataagtgaaaccgaactgttcaataaaaaaatc
aaaaaagtgaagaagcgccaaaagctctcgaatgcagaacgaatccaaagttactctgaa
ttaaaagtaggtgactacgtggttcatgtgaaccatggtatcgctcgttatgttggcatg
gaaacgctagatatcaacggtgtgcataaagattacttgctacttgtttaccaaggagag
gataaactatttatccccgtcgatcaacttgatttagttcaaaaatatgttggtgcagaa
ggtaaatcaccaagattaaacaaacttggtggcgctgaatggaagcgagtgaagaagaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatatgccgaacgtgaa
gctgaaaaaggctatgcgtttagtgcggatgatgaaatgcagcgcgaatttgaagaggct
ttcccgtatcaagaaaccgaagaccaactgcgctcgatttcagaaatcaaaaaagatatg
gaacgaccgcgcccgatggaccgtctgttggttggagatgttggttacggaaagaccgaa
gtggccttacgagctgctttcaaagcaattatggatggcaagcaagtcgccttcttagtt
ccgaccaccattttagcacaacaacattttgaaacaatgaaagaacggttccaaggtttc
ccaatagaaatcggacttttaagccgtttccgaacaaagaaacaacaaacagaaacatta
aagggtatgaaaaacggcacagtcgacgttgttgttggtacccatcgtttattatcaaaa
gatgtggagtatcaagatttaggcttattaattgtcgatgaagaacaacgattcggcgta
actcataaagaaaaaatcaaacaaatgcgttccaaaatagacgtactaacacttactgca
acaccaattccaagaactttacacatgtccatgctcggcgttcgtgacctctctgttatc
gaaactccgccagcgaaccgttttccagtgcaaacatatgtggcggagcagaataacgtt
ttagttcgggaagcaattgaacgtgaactagcgcgcgacggacaagtttattatctatat
aatcgagtggaatccattacgcaaaaagcagatgaaatttctgcgatggttcctgatgct
agggttgccactgcgcacggacagatgggtgaatcggaattagagtctgttattttaagt
ttccttgaaggggaattcgatgtacttgtaacgacgaccatcattgaaaccggcgtagac
attccaaacgttaatacactctttgttcaagatgctgatcggatgggtctttcacaactt
tatcagttgcgcggacgagtagggcgttggaacagaatcgcctacgcttacttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaagaattc
actgaattaggttcaggtttcaaaatagcgatgcgtgacttatctattcgtggtgccggt
aatatcctcggagcgcaacaacatggctttatcgattcagtcgggtttgatctctactcg
caaatgcttaaggaagcaattgaggcgaaaaagccaaaagaagaacaaaaacaaattgtc
cctgttgaaattgatatccaagcagacgcctatattccggaatattacattacagacggc
cgccagaaaatcgagatgtacaaacgcttccgcaatattgaaacgttaagcgaactcgaa
gatttacaaagcgatatgattgaccgttttggtgaatatccagaagaagtagaatatcta
ttcacaatgacagaactcaaagtccatgcactcgaagttggcattgagtccgtcaaacaa
gaacaaaataaaattaccatgctattttcagaaagcggaacagcaggcattcgcggagat
atcgtcatgcaaatcattggcgaatttggccgaatggtcggtgtgggtatggaaggtaca
caactaaaaatcacgataaacgtccaaaataaacctttaaaagaatggttataccaagtc
aaaagtttggctgaaaaacttcgcggagccatgaaagaaagagcatctgcagaaaattga
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