Listeria monocytogenes M7 (serotype 4a): LMM7_0235
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Entry
LMM7_0235 CDS
T01988
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmq
Listeria monocytogenes M7 (serotype 4a)
Pathway
lmq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMM7_0235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmq03400
]
LMM7_0235 (mfd)
Enzymes [BR:
lmq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMM7_0235 (mfd)
DNA repair and recombination proteins [BR:
lmq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMM7_0235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
AEH91241
UniProt:
A0A0E0USC1
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All DBs
Position
236892..240431
Genome browser
AA seq
1179 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
LPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNVERA
EKMQQTLADYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELEAVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIV
PVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYL
FTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGT
QLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatatccgagcggttttaaatgcg
ctggatgaaaaagaaaaagcgcaacttgtcactgggctcacaggttcttctcgtgcgcta
tttgcaagtgtggtagaaggcgcgtcaaagcgtccagttgtatttgttacgcacaattta
taccatgcgcaaaaattatatgatgatttactttctttaatggatgtcgatcgactattt
ttatatccagcagatgaactgatttcttctgagttgagtatctctagcccggaacttcgc
ggtcaacgcgtggaagcgctcgatttcttactatctggaaaaccgggaattgtcattgtg
ccagttgctggtctcagaaaaatgcttccaccagtttcgctttggaaacatttcaatata
tccattgtagagggcgaagaaattgatccagatgtactacgccaaaaactagtgacaatg
ggttacacaatgagtggaatggtaaatacgccgggagaattcagtgttcgcggcgggatt
attgacatttatccaattacagaagaatttccaattagaatagaactttttgacaccgaa
gtagattctcttcgtttctttgatgtggaaacgcagcgctcgacaacacgtgtggaagaa
ttccgtttactacctgcaacagaaatcattttagatcaaagctattacccagatatcgtc
aaacgcttagaaaagaaaatgacacatactttaaatgaattgaaagaaaacgaggataaa
caagcgctcgttgaaaatttagaagaagaccttgaaatgcttcgttctggcgtgaaaccg
gatatgttctttaaatatatcggtctggcttatcctgatccagcctccctttttgactat
ttaccaaaaaacacggcaattttgcttgatgaatttgggcgaattttagaaacggaagaa
agcttggagcgggaagaagcggagtggcaaacggaaacgttaagtcgaatggaaacggtt
cgcgacgtgcaagtaagtcattcttttaaaaagctattagaagcaaatcactcgccgaaa
atttacttatcccttttccaaaaacaaatggcgagcatgcgcgtctcgaaaacgaccaac
attgtctataaacaaatgcaacaatttcacggtcagatgaacgtgttgaaaaccgaacta
gaaagctggcacaagaacaattatgcggttgttatattagcgccaaacgtagagcgtgcc
gaaaaaatgcaacaaactttagctgactatgacatggaaagcacgattttgaaaaaagaa
tcggatgttccaaaatatggaatggttcaatttgtcatcggaactttccagaacggtttt
gaacttccgcttgctaaagtagcgattattagtgaaaccgaactctttaataaaaagatt
aaaaaagtgaaaaagcgccaaaaactttcgaatgcagaacgaattcaaagttactctgaa
ttaaaagtgggcgactatgtggttcacgttaaccacggtattgctcggtacgtaggcatg
gaaacgttagatatcaatggcgtgcataaagattatttgctacttgtttaccaaggcgaa
gataaactatttatccccgttgaccaacttgatttagttcaaaaatatgttggtgcagaa
ggtaaatcaccaagattaaacaaacttggtggcgctgaatggaagcgagtgaagaagaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatacgccgaacgtgaa
gctgaaaaaggctatgcgtttagtgcggatgatgaaatgcagcgcgaatttgaagaagct
ttcccgtatcaagaaaccgaagaccaactccgctcgatttcagaaatcaaaaaagatatg
gaacgaccgcgcccaatggatcgcctattggttggagatgttggttacggaaaaaccgaa
gtggccttacgagctgctttcaaagcgattatggatggcaagcaagtcgctttcttagtt
ccgaccaccattttagcgcaacaacattttgaaacaatgaaagaacgattccaaggtttc
ccgatagaaattggacttttaagccgttttcgcacgaagaaacaacaaacagaaacatta
aagggcatgaaaaatggcacagtggacgttgttgtcggtacccatcgtttattatcaaaa
gatgtggagtatcaagatttaggcttattaattgtcgacgaagaacaacgattcggcgta
actcataaagaaaaaatcaaacaaatgcgttccaaaatagacgtactaacacttactgca
acaccgattccaagaactctacacatgtctatgctcggcgttcgtgatctttctgtcatc
gaaactccaccagcgaatcgttttccagttcaaacatacgtggcggagcaaaataatgtt
ttagttcgggaagctattgagcgtgaactagcgcgcgatggacaagtttattatttatac
aaccgagtggaatctattacacaaaaagcagatgaaatttctgcgatggttcctgatgct
cgggtggcgactgcgcatggtcaaatgggcgaatcggaattagaagctgttattttgagt
ttccttgaaggtgaatttgatgtgcttgtaacgacgaccatcattgaaaccggcgtagat
attccaaacgttaatacactattcgttcaagatgccgaccggatgggtctctcacagctt
tatcagctacgcggtcgggtaggacgttggaacagaattgcctacgcttacttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaagaattc
actgaattaggttcaggcttcaaaatagcgatgcgcgacttatctattcgtggtgccggt
aatatcctcggagcgcaacaacatggctttatcgattcagttgggtttgatctctactcg
caaatgctcaaagaagcaatcgaggcgaaaaaaccaaaagaagaacaaaaacaaatcgtc
cctgttgaaattgatattcaagctgatgcctatattccggaatattacattacagacggc
cgccaaaaaatcgagatgtacaaacgcttccgcaatattgaaacgttaagcgaactcgaa
gatttacaaagcgatatgattgaccgttttggtgaatatccagaagaagtagaatatcta
ttcacaatgacagaactcaaagtccatgcgctcgaagttggtattgagtccgtcaaacaa
gaacaaaataaaatcaccatgctattttcggaaagtggaacagcaggcattcgcggagat
atcgtcatgcaaatcattggcgaatttggccgaatggtcggcgtaggtatggaaggtaca
caactgaaaatcacgataaatgtccaaaataaacctttaaaagaatggttatatcaagtc
aaaagtttggctgaaaaacttcgtggagctatgaaagaaaaagcatctacagaaaattga
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