Listeria monocytogenes M7 (serotype 4a): LMM7_2491
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Entry
LMM7_2491 CDS
T01988
Symbol
rnr
Name
(GenBank) putative exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmq
Listeria monocytogenes M7 (serotype 4a)
Pathway
lmq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMM7_2491 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmq03019
]
LMM7_2491 (rnr)
03016 Transfer RNA biogenesis [BR:
lmq03016
]
LMM7_2491 (rnr)
Enzymes [BR:
lmq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LMM7_2491 (rnr)
Messenger RNA biogenesis [BR:
lmq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMM7_2491 (rnr)
Transfer RNA biogenesis [BR:
lmq03016
]
Prokaryotic type
tRNA degradation factors
LMM7_2491 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
RNase_II_C_S1
OB_cyt-4
OB_RNR_1st
SH3_VIII-1_N
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AEH93496
UniProt:
A0A0E0UYT0
LinkDB
All DBs
Position
complement(2504217..2506598)
Genome browser
AA seq
793 aa
AA seq
DB search
MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRK
NRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRK
GDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHK
VIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDV
VDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSP
LDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIF
ESIIKTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFD
FKEARVVVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK
EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD
TVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEH
SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSA
MKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDK
QKRQREKPIDKTRNFKSNQKKGRNKRRTGNSDETKPKTERKDDEWYTKPKKKKKKKPFYQ
GVAKESPKKKKRR
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaaaaacaaatggaagaaaaaattatgaatctattaacttcagcgcctgataaa
acatttgcgcttgaagatttggaaatagaaatagctttaaataatgcggatgattttaaa
ttaatggtgaaagctttagtgaaactggaagattccggaactattgtccgctcaaggaag
aatcggtatgcattaccagaaaaaatggacttagtaaaaggaacgtttcgcgcgcatgaa
cgaggttttggctttgttctcccggaagaaaaagaaatggacgatatttttatcccacca
aatgaagtaaaagatgcaatgaatggcgatttagtttttgcaacgattacgaaacgtaaa
ggcgataatttggcagagggtacgattaagaaaattgtcgaacggaagacaacgcaaatc
gtcggaacttatatggaagacttagctggtactccaattgtgatgccggatgataagcga
cttttcggtgaagtggaaattgatttagaggatggcttaaaaccagtcgacgggcataaa
gttatcgttgaattgacggaatatgcaactggacatgcgcgtgcaagaggggttgttaaa
tcaatcatcggtcatcgcaatgacccaggtgtggatattttatcgattattcataaacac
ggtatttcaatcgggttcccggaagaagtaatggagcaagtaagtaaagcgccagatgtg
gttgatgattcggatattggtaaccgtcgtgatcttcgtgaccaaatgattattacgatt
gacggggcagacgctaaagatttagacgatgctgtaacggttacgcaactaccgaatggc
aactggaagctaggtgttcatattgcggatgtaacgcattatgtgacagaaggctcgccg
cttgatgtcgaagcgcaagaacgtggaacgagtgtttatttggttgaccgcgtaattccg
atgttgccacataaactatcgaacgggatttgctcgcttaacccacaagtagatcgtttt
actatgagttgtgaaatggaaatcgatgaagaaggtcatgtggttaaccacgaaattttt
gaaagtattattaaaacaacggaacgtatgacgtatacggatgtaaatgatattttagtt
gaaaatgacgaagctttgcgtgaaaaatatgcgccaatcgttccaatgcttgaaaagatg
caacatttggccgaaatccttcgccgtaaacgtgaaaaacgtggcgcgattgattttgac
tttaaagaagcacgtgtagttgttgatgaagacggtcatccagaagcagttgtgatgcgc
gaacgttcagcgggagagcatttgattgaagagtttatgcttgctgccaatgaaacagtt
gcagagcatttccactggatggatgtaccatttatttaccgtatccatgaagatccaaaa
gaagataaattagcgcggttctttgaatttattacgaactttggtttgattgtgaagggg
actgctaacgatattcacccagctgctttacaacaagtactagaagaagtaaaaggtaaa
ccggaagagatggttgtttcgactgttatgctgcgttcgatgcaacaagcgaagtatgac
acagtaagcgccggacactttggtttgtctactgatttctatacacatttcacgtcacca
attcgtcggtacccggatttgatcgttcacaggttgattagagagtatttaattaatggg
gatgttcgtccggaaacgttagaaaaacgcgctgaggagcttcctgagattgctgaacat
agctcgaaaatggagcgccgtgccgttgaagcagagcgcgaaacagacgaactgaagaaa
acagaattcatggtcgacaaagtgggtgaacgtttcatcggaatcattagttccgtaacc
aattttggcttatttatcgaactaccgacaacgattgaaggccttgtccatgtgagcgca
atgaaaggcgattatttcaaattccaccaaaatcaattagcgatgattggcgaaagaaca
ggccaaatttatcgtattggtgatgaagtggaagtcgaagtaaccaaagtagacgtggat
gctcgtgaaatcgattttgcccttcgtagtgaaggtaaaccaggtccagtgagcgataaa
caaaaacgccaacgcgaaaaaccgatcgataaaactagaaacttcaagagtaaccaaaaa
aaaggtcgtaataaacgtagaactggtaattcagatgaaacgaaaccaaaaacagaacgc
aaagatgacgaatggtatactaaacctaaaaagaaaaagaagaaaaaacctttttatcaa
ggtgtagcaaaagaaagcccgaagaagaaaaaacgtcgctag
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