Listeria monocytogenes R479a (serotype 1/2a): LMR479A_1358
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Entry
LMR479A_1358 CDS
T03180
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lmr
Listeria monocytogenes R479a (serotype 1/2a)
Brite
KEGG Orthology (KO) [BR:
lmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmr03032
]
LMR479A_1358 (topA)
03400 DNA repair and recombination proteins [BR:
lmr03400
]
LMR479A_1358 (topA)
Enzymes [BR:
lmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LMR479A_1358 (topA)
DNA replication proteins [BR:
lmr03032
]
Prokaryotic type
DNA Topoisomerases
LMR479A_1358 (topA)
DNA repair and recombination proteins [BR:
lmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LMR479A_1358 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
JHBP
DUF2996
Toprim_2
Toprim_3
Lar_restr_allev
HypA
Motif
Other DBs
NCBI-ProteinID:
CDM16580
LinkDB
All DBs
Position
1306590..1308668
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AA seq
692 aa
AA seq
DB search
MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGK
GPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQSDKLRVVFNEITKEAVKE
SFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREK
EINNFKPEEYWTIDGNFLKGKKKFQANFYGLNGKKKKLSTADDVKEVMSAIKGKSFDVTD
VTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMR
TDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVK
EYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIKFHGFMKVYVE
SNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTY
SPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGE
VEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACS
RFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERAC
PKCEKRALVEKKLKKGVQVQCTTCDYKESTQQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcagattatttagtgattgtagagtcacctgcaaaagcaaaaacgattgagaagtat
ttaggcaagaaatttaaagttaaagcttccatgggacatgttcgtgacttaccgaagagt
caaatgggtgtagacacagaaaatgactatgaacctcgttatattacgattcgcggaaaa
ggccctgttttaaaagaattaaaacaagctgccaaaaaagcgaaaaaagtctatctcgca
gccgatccagatcgtgaaggggaagcaattgcatggcacttagctaacagtttagagtta
gatcaatcagacaaattacgtgtagtatttaacgaaataacgaaagaagcagtaaaagaa
tctttcaaaacaccacgtaaaattgacatggatttagtcaatgcacagcaagcgcgtaga
attttagaccgtttagttggatataatatcagccctatcctatggaaaaaagtaaaaaaa
ggtttgagtgctggtcgtgttcaatctattgcacttcgaatcattattgatagagagaaa
gaaatcaataatttcaaacccgaagaatactggacaattgatggtaacttccttaaaggt
aagaaaaaattccaagccaatttttatggtctaaatggcaaaaagaaaaaactttctact
gcggatgatgtaaaagaagtaatgtctgcaatcaaagggaaatcatttgacgtaacagat
gtaactaaaaaagaacgacttagaaaccctgctgcaccatttaccacttcaagtttgcaa
caagaagcagcacggaaactaaattaccgtacaagaaaaacgatgatgcttgctcaacaa
ttatatgaagggattacacttggcaaacaaggcacagttggtttaatcacttatatgcgt
accgactccactcgtattgcagattccgctatactagaagcaagtaactacattaaagaa
acttatggacctgaattttctcgtaatcataaacgatcagataaaaacgcaaaaggtgcc
caagatgcccatgaagcaatcaggcctacaagtgcaatgagaagtccccaagaagtaaaa
gaatatttaactcgtgaccaacttcgcttatatcggctgatttgggaaagattcattgct
agccaaatgacaccagcagttcttgatacaatgcgcgttgacttagataacaatggcgtg
aatttcagagcgaatggctcgaaaattaaattccacggctttatgaaagtctatgtagaa
agtaacgatgataatacggaagaaaaagaaaatattctaccggatttgaaaaaaggagat
aaggtgcagtccgaatcactcgaacagcggcaacatttcacgcagccacctccacgttat
accgaagctagattagtaaagacgctagaagaaattggtattggccgtccttcgacttat
tcgccaacgcttgatacaattcaacgcagaaattatgtttccttaacaaataaacgattt
atcccaactgaattaggtgaaatagtcaatgaaatgattgaagagtatttcccagagatt
ttagatgtgaagttcaccgccaacatggaaagtgagctagatgaagtagagcacggagaa
gtcgaatgggtgaaagtcattgatgaattttataaacgatttgagccaaatgtcattaaa
gcagatgctgaaatggaaaaaatcgagattaaagatgaaccagctggcattgactgcgac
ctttgcggagccccaatggtatacaaaatgggtaaatatggtaagtttcttgcttgcagt
agatttccggattgtcggaatacaaaagcaatcgttaaagaaatcggtgttacttgtcca
aaatgtgagaaaggacatgtaatagaaagaaaaagtaagaaaaaacgtattttctacggt
tgtgatcgttatccagattgtgactatgtatcttgggataaaccagtcgaacgtgcttgt
ccgaaatgtgagaaacgagcactagtcgagaagaaattgaaaaaaggtgtacaagtacaa
tgtacaacttgtgattacaaagaatcaacccaacaataa
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