Listeria monocytogenes R479a (serotype 1/2a): LMR479A_1487
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Entry
LMR479A_1487 CDS
T03180
Symbol
rny
Name
(GenBank) endoribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lmr
Listeria monocytogenes R479a (serotype 1/2a)
Pathway
lmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMR479A_1487 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmr03019
]
LMR479A_1487 (rny)
Messenger RNA biogenesis [BR:
lmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMR479A_1487 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
HTH_6
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
CDM16709
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All DBs
Position
1435484..1437046
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AA seq
520 aa
AA seq
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MTIAITIISSLLFLIVGLVVGSLIFKSSTEKKLAAARGTAELIVEDAKKEAETTKKEALL
EAKEENHRLRTEIENELRGRRTETQKAENRLLQREENLDRKDTSLSKREATLERKEESIS
KRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIILNQVEEELTHDTAIMVKESEN
RAKEESDKKAKNILSLAIQRCAADHVAETTVSVVTLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQDGRIHPARIEEMVDKARKEVDEHIR
EVGEQATFEVGIHSIHPDLIKILGRLRYRTSYGQNVLNHSLEVSKLAGILAGELGEDVTL
AKRAGLLHDIGKAIDHEIEGSHVEIGVELATKYKENDVVINSIASHHGDTEATSVIAVLV
AAADALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSYAIQAGREVRIIVEPDTID
DLSSYRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcgcaatcacgatcatctccagtttgcttttcttaatcgtcggtctagttgtt
ggttctctaatttttaaatctagtacagagaaaaaactggctgctgcaagggggactgct
gaattaattgtagaggatgcgaagaaagaagcagaaactacaaaaaaagaagcattgctt
gaagcgaaggaagagaatcataggttacgtactgaaatcgaaaatgaacttcgtgggcga
agaacagagacacagaaagcagaaaatcgcttattgcaaagggaggaaaacctcgaccgt
aaagatacttctttaagtaaacgagaagctacacttgaaagaaaagaggagagtatcagt
aaacgtcaacaacaaattgaagagaaagaaagcaaactagctgagatgattcaagcggag
cagacagaactcgaaagaatttctgcgctcagcaaagaggaagcgaaatctatcatcctt
aaccaggtagaagaggaattaacgcatgatacagcaatcatggtcaaagaatcagaaaac
cgggccaaggaagagtcggataaaaaagcaaagaatattctctcactagctatccagcgt
tgtgcagctgatcatgtggcagaaacaacggtatctgttgttaccttaccaaatgatgag
atgaaaggtcggattatcggacgtgaaggccgtaatatccgcacgcttgagacgttaacg
gggattgatttgataattgatgatacaccggaagcagtaattctttccggatttgaccca
attcgacgtgaaatcgctagaatcgccttagaaaaacttgttcaagatggaagaatccat
ccagctcgaattgaagaaatggtggacaaagcccgtaaagaggtggatgaacatattcgc
gaagtcggggaacaagcaacatttgaagttggaattcattccatccatcctgatttgata
aaaattcttggccgcttgcgttatcgtactagttacggacaaaacgttcttaaccactca
ctcgaagtttcgaaacttgcaggaattcttgcaggagagcttggcgaagacgttacgctt
gctaaacgggccggactacttcatgacatcggtaaagcaattgaccatgaaattgaagga
agtcacgttgaaatcggcgtggaacttgctaccaaatacaaagaaaatgatgtggtaatc
aatagtattgcttcccatcatggagatacagaagctacttctgttatcgcagtattggtc
gcagcggcagatgcactttctgctgcaagaccgggagctcgtagtgaaacgcttgaaaat
tacatccgtcgtttagaaaaattagaagaaatttctgagtcttacgatggtgtagaaaaa
tcttatgctatccaagcaggacgtgaagtacgtattatcgttgagccagatacaattgat
gatctttcatcttaccgccttgcacgcgacataagaaaacgaattgaagaggaattagat
tatcctggtcacattaaagtgaccgtcattcgtgaaacaagagcagtagaatacgctaaa
taa
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