Limosilactobacillus mucosae: LBLM1_09915
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Entry
LBLM1_09915 CDS
T03814
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmu
Limosilactobacillus mucosae
Pathway
lmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBLM1_09915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmu03019
]
LBLM1_09915
03009 Ribosome biogenesis [BR:
lmu03009
]
LBLM1_09915
Enzymes [BR:
lmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBLM1_09915
Messenger RNA biogenesis [BR:
lmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBLM1_09915
Ribosome biogenesis [BR:
lmu03009
]
Prokaryotic type
rRNA helicases
LBLM1_09915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
LidA_Long_CC
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJT51237
UniProt:
A0A0D4CM52
LinkDB
All DBs
Position
complement(2114861..2116369)
Genome browser
AA seq
502 aa
AA seq
DB search
MKFGELGLSNSLLKAIKRSGYEEATPIQEQTIPMVLNGDDVIGQAQTGTGKTAAFGLPIL
EHIDPQNPAIQALIISPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKSLKHQP
EILVGTPGRLRDHIRRHTVDLSQINTLVLDEADEMLNMGFLEDIEAIINETPATRQTLLF
SATMPPEIKRIGMQFMKEPKTVRIQAQELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLTARGYNAAGIHGDLTQDRRTKIMKRFKEGKLDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTKV
RMLPLKPPTEEEAFKGQLASAVSEIDELIAQPSTQRYADAAQKLLETHDALDLAAALLND
MTKEAASQVPVKITPERPLPRRKRRQSSGYRGSSYRHGNSSHRSYRGGKRTGQSKSRRSY
REDSHGNGRRGFNIRRRGGQEQ
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttggagaattagggttgtcaaacagcctgcttaaagccatcaaacgcagcggt
tatgaagaagccacgccaattcaagaacaaacgattccgatggttttaaacggcgatgac
gtaattggtcaggcacaaaccgggaccgggaagacggctgcgtttgggctgccgattctt
gaacacattgatcctcagaatccggcaattcaggccctgatcatttcgccaacgcgtgaa
ttggcgatccagacgcaagaagagctgtatcggctgggaaaagacaagcgggccaaggtt
caggtcgtctatggtggagctgatattcgccgtcagatcaagagcctgaagcatcagcca
gagattctggttgggacgccgggccggctgcgggatcatattcggcggcatacggttgat
ttgagtcagattaatacgctggttttggatgaggctgatgagatgctgaacatgggcttt
ttagaagacattgaagccatcatcaacgaaacgccggcaacacggcagacgctgctgttc
agtgcaacgatgccgccagaaatcaagcggatcggtatgcagtttatgaaagaacccaag
accgtacgcattcaagcccaagagctgacgaccgatctggtggatcaatactacgttcgg
gcacgcgattatgaaaagttcgacatcatgacgcgactgattgatgttcaagatcctgac
ttaacgatcgtatttggccggaccaagcgccgcgtcgatgaactatcgaagggcttgacg
gcacgcggctataacgcggctggtattcatggcgatctgacacaggatcggcggaccaag
atcatgaaacgctttaaggaaggcaagcttgatatcctggttgccaccgacgttgcggca
cgtggacttgatatctcaggcgttacgcatgtctacaactatgatattccatccgatccc
gacagctacgttcaccggattggtcgaactggccgtgccggacaccatggcgtttcgttg
acgtttgtcacgccaaatgagatggactatctgcatgagattgaaaagctgaccaaggtg
cgcatgctgcctttgaagccgccaactgaagaagaagcgtttaaggggcagctggccagc
gccgtcagtgagatcgatgaactgatcgcacagccatccacgcagcgctatgccgatgcc
gcgcaaaaactgctggaaacgcatgatgcccttgatctggcagcggccctgcttaatgat
atgaccaaagaagctgccagccaggtaccggttaagattacgccagaacggccattgcca
cgtcgcaagcgtcgtcaaagcagtggctatcgtggcagcagctatcgccatggcaactca
tcgcatcgcagttatcgtggcggcaagcgtaccggtcagagcaagagtcgccgcagctat
cgcgaagactcgcatggcaatggacgccgcggctttaacattcgccgccgtggtggtcag
gaacaatag
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