Lactobacillus mulieris: PUW59_03300
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Entry
PUW59_03300 CDS
T08874
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmul
Lactobacillus mulieris
Pathway
lmul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUW59_03300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmul03019
]
PUW59_03300
Messenger RNA biogenesis [BR:
lmul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PUW59_03300
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
Phage_holin_8
Motif
Other DBs
NCBI-ProteinID:
WEB31350
LinkDB
All DBs
Position
complement(672732..674414)
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AA seq
560 aa
AA seq
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MVRIKKNEVAVFAIGGLGEIGKNMYCVQYQDEIIIMDCGIKFPEDDLLGINYVISDYSYL
IKNRKKIKALVVSHGHEDHIGGIPFLLEKIPEIPVYATPFALALIKGKLDEHGILKTTEL
HEEYEDTVLTFDKLSVTFFRTTHSIPDTLGIAVHTPLGAVIFTGDFKFDLTPVMNQPAPD
FQRMAKLGDEGVLALLSDSTNAEVSAFTKSERFVAKSLNNIIKGIDGRIIFATFASNLYR
VSTAVEAAIETGRKIAIFGRSMENGIQNGIDLGYLNVPKDLIVDANEINRLKPNEAMILC
TGSQGEPLAALSRIADGTHRQISIQPGDTVIFSSNPIPGNTLSVNHLINKLMEAGANVIH
GKVNNVHTSGHGGQEELKMMVRLAKPKYMIPVHGEYRMQVIHTHLAQDAGVPKENTFVLS
NGEVVAFSPEGSRIAGHIPEGDVFVDTSGTADVGNVVVRDRQILSEEGLVVAVATVDSKH
QRVLAGPDILSRGFVYMRESQDLISQAQKNVYHVLRTQMAKKPRPSENDIRKAIIANLQD
FLYARTERRPLILPMIIEKK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggttagaattaaaaaaaatgaagtagctgtttttgccattgggggtttaggcgaaatc
ggtaaaaatatgtactgcgttcagtatcaagatgaaattatcatcatggattgtggtatt
aagttccccgaagatgatttattaggtattaactacgtaattagtgattattcatatcta
attaagaatcgtaaaaaaatcaaggccttggttgtcagccatggtcacgaagatcatatt
ggtgggattccattcctacttgaaaagattccagaaattccagtctatgcaacacctttt
gcattagctttaatcaaaggtaaattagatgaacatggaatcttaaaaactactgaactt
catgaagaatatgaagatacagttttaacttttgataagttatccgttacattcttcaga
actacccactcaattcctgacacattgggaatcgcagttcacacgccacttggtgctgtg
atttttacaggtgacttcaaatttgatttaacacctgtaatgaatcaacccgcaccagat
tttcaaagaatggcaaaattaggtgatgaaggtgtactagcactgctatctgattcaaca
aacgctgaagtgtcagcatttactaaatcagaacgatttgtcgcaaaatcattaaataat
atcataaagggtatcgatggtcgtattatttttgcgacatttgcatctaacctttatcgg
gtttcaactgctgttgaagctgcaatcgaaaccggacgaaaaatcgccatttttggtcga
agtatggaaaatggtattcaaaacggtattgatttaggttacttaaatgttcctaaagat
ttgattgttgatgctaatgaaattaaccgcttgaaacctaatgaagctatgattttatgt
actggatcacaaggggaaccattagctgccctttcaagaattgctgatggtactcaccgt
caaattagcattcagcctggtgatacggttattttttcatcaaatccaattcctggtaat
actttgtctgttaaccatttaattaataaattaatggaagcaggtgcaaatgttattcac
ggtaaagtaaataatgttcatacttctggccatggtggacaagaggaattaaaaatgatg
gtccgtctggctaaaccaaaatatatgattccagttcatggtgaatatagaatgcaggtt
attcatacacatcttgctcaagatgctggagttccaaaagaaaacacttttgttctaagt
aatggtgaagttgtagcatttagtcctgaaggttcaagaattgctggtcacattcctgaa
ggtgatgtttttgtagatacttcaggtactgcagatgttggaaatgtcgttgtacgtgat
cggcaaattttatctgaagaaggtttagtggtcgcagttgcaactgttgactcaaaacat
caacgcgtcctcgcaggacctgatattttgagtcgcggttttgtttatatgcgtgaatca
caagacttaatttctcaagctcagaaaaatgtctaccatgtattacggacacaaatggcc
aaaaagccacgcccttctgaaaatgatattcgaaaggcaataatcgccaacttacaagat
ttcttgtacgcacggactgaacgtagaccgctcattttaccaatgattatcgagaaaaaa
taa
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