Ligilactobacillus murinus: CPS94_01925
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Entry
CPS94_01925 CDS
T07549
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lmur
Ligilactobacillus murinus
Pathway
lmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS94_01925 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmur03019
]
CPS94_01925 (rnr)
03016 Transfer RNA biogenesis [BR:
lmur03016
]
CPS94_01925 (rnr)
Enzymes [BR:
lmur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CPS94_01925 (rnr)
Messenger RNA biogenesis [BR:
lmur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPS94_01925 (rnr)
Transfer RNA biogenesis [BR:
lmur03016
]
Prokaryotic type
tRNA degradation factors
CPS94_01925 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AWZ37761
UniProt:
A0AAD0P9N0
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All DBs
Position
382702..385092
Genome browser
AA seq
796 aa
AA seq
DB search
MEKEKIKEALIGYFEAEPEEKFTVQELADKLKMNKAGQFNFVVQAVAQLEHDKVITLDDE
GNFSLVRHESAPKFPGIFHANDRGFGFVTVDPEEPDYFINPTQTLSALNGDEVEVEMIAA
GDPTIGKRPEGKITKIIQRNLTQVVGEFKPLEGENLPNGIIGSVHLRDKKLSNYRFLVED
TGLHPVAGEIVLADITTYPSPELPGIIKGIATKVIGNVNDPGIDILQIVYQHDIPHQFPE
DVMQQVAKIPDHVTPEQKIGRRDLTSEPMVTIDSIESKDLDDAVSVRKLANGNYHLGVHI
ADVSHYVTPNTPLDREAFERGTSVYLTDRVIPMIPAKLSNGICSLNPQVERLALTCEMQI
DPQGEVVSHEIFPSVIKTTERMTYKAINKILESDDQKEKERYHDLVPMFEEMAELHKILL
KMRKRRGAIEFEDTEAKIIVDEKGHAIDIQLRERGTSERMVESFMLAANETVAAHYKNLH
VPFIYRIHETPKEEKIKSFFEMLSGLGVEVTGKVTDIKPKMLQKILKKVAGKPEEPMVSV
MLLRSMQQAKYSPEPLGHFGLAAKDYTHFTSPIRRYPDLMAHRMIHYYAENGLGEASQAK
FQAELPEVSQHSSQAERRAIDAERDTDAMKKAEYMADHVGEEFDAVVSSVTKFGMFVELP
NTVEGLIHISEINDDYYVFVEKQMALVGRKTKQTYRIGQPIRVKLVNVNAEQKEIDFKLL
SLGEAPKTDLLEGVELPEMPPRKKFDRKNGDKRGKRPFKRQNNNNRRDYKRDKPRLGDRN
GGGRKPFYKKRREQKK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaaaagataaaagaagcattaataggttactttgaagcagaacctgaagag
aaatttactgttcaagagctagccgacaagttaaaaatgaataaggctgggcaatttaat
tttgtcgttcaagctgtagctcaacttgaacatgataaagtcattactttggatgatgaa
ggcaattttagtcttgttcggcatgaaagcgcccctaaatttccggggatctttcatgca
aatgaccgaggttttggttttgtgacggtcgatcctgaagaaccagactattttatcaat
ccaacacagactctttcagcattaaatggtgatgaggtcgaagttgaaatgatcgcagca
ggtgatccaacgatcggtaaaagacctgaaggaaagatcactaagatcattcaacggaat
ttgacacaagtcgtgggtgaatttaaacctttggaaggtgaaaatctacctaatgggatc
attgggagcgttcatctacgtgataagaaactttcaaattatcgttttttagttgaagat
actggtctacatccagttgctggtgagatcgtattagctgatattacgacttatccaagt
cctgaacttccagggatcattaaggggatcgcaactaaagtgatcggaaatgtcaatgat
ccagggatcgatatcttacagatcgtatatcaacatgatattccacaccaatttccagaa
gatgtgatgcaacaagtggctaagatccctgatcatgtgactccagaacaaaagatcgga
cgtcgtgatctaacaagtgaaccaatggtaacgatcgatagtatcgaatcaaaagaccta
gatgatgctgttagtgtccgaaaattagccaacggcaactaccatttaggagtccatatt
gctgatgtatctcattatgtgacgcctaataccccattagaccgagaagcttttgagcgt
gggacatcagtctatttgacggatcgtgtgatcccaatgatcccagctaaattatctaat
gggatctgttcattgaatccccaagttgaacgattagctttgacttgtgagatgcagatc
gatccgcaaggtgaagtagtttcacacgagatctttccaagtgtgatcaaaacgacggaa
cggatgacttataaagcgatcaataagatcttggaatcagatgatcaaaaagaaaaagaa
cggtatcatgacctagtgccgatgtttgaagaaatggcagaactacacaagatcctttta
aaaatgcgcaagcgtcgtggtgcgatcgaatttgaagataccgaagctaagatcattgta
gatgaaaaagggcatgcgatcgacattcaattacgtgaacgtggtacaagtgagcgtatg
gtcgaatcatttatgttagcggcaaatgaaacagtggcagcacactataagaatttacat
gttccgtttatttatcggatccatgaaacaccaaaagaagaaaagatcaagtcatttttt
gagatgttatctggtttaggtgtcgaagtaactgggaaagtgaccgacatcaaacctaaa
atgttacaaaagatcttaaaaaaagttgctggtaaacctgaagaacctatggtttcagtg
atgttgctccgttcgatgcaacaagccaaatattcaccagaacctttgggacattttggt
ttagctgctaaagattatactcattttacttctccgatcagacgttaccctgacttaatg
gctcatcgaatgatccattattacgctgaaaatgggcttggtgaagctagtcaagctaaa
ttccaagcagaattaccagaagttagccaacacagttcacaagctgaacggcgagcgatc
gatgctgagcgtgatactgatgcaatgaaaaaagctgaatatatggctgatcatgtcggt
gaagaatttgatgcagttgtaagctcagtgactaaatttgggatgttcgttgaactacca
aatacggtcgaaggcttgatccacatcagtgagatcaacgatgattactatgtttttgtt
gaaaagcaaatggctttagtcgggcgcaagacaaagcagacttatcgtattggacaaccg
atccgcgtgaagttagtcaatgtcaatgccgaacaaaaagagatcgattttaaacttttg
agtttaggtgaggcaccaaaaactgatctactagaaggtgttgaattacctgaaatgcca
ccaagaaagaaatttgatcgtaaaaatggtgataaacgtggtaagcgtcccttcaaacga
caaaataacaataaccgtcgtgactataaacgtgataaacctcgtttgggtgaccgaaat
ggtggaggacgtaaaccattttataaaaaacggcgtgaacaaaagaagtaa
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