Ligilactobacillus murinus: CPS94_04655
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Entry
CPS94_04655 CDS
T07549
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmur
Ligilactobacillus murinus
Pathway
lmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS94_04655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmur03019
]
CPS94_04655
Messenger RNA biogenesis [BR:
lmur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPS94_04655
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AWZ38279
UniProt:
A0AAD0KZU4
LinkDB
All DBs
Position
complement(936776..938485)
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AA seq
569 aa
AA seq
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MSDIKIISLGGVRENAKNMYAIEVNDDIYILDCGLKYPENELLGIDIVIPDFEYLRQNAR
RIVGVFLTHGHADAIGALPYFVSEFDVPVFGSELTIALAKIACENEEIAKKFNDFHVINE
KTEIDFPSATVSFFKTTHSIPESLGVALKTEEGTIVYTGDFKFDQTASAQYQTDLARLAE
LGNEGVLALLSDSANAENPSETVNEREIYDFISETFEYRKGRIIVACVASNISRVQQVLD
AAQANDRKVALTGHDVEKIVRTALKLNKLHLPSDDILIPIKDIKRYDDDQIVILEAGRSG
EPLKSLQKMALKRHRSVSLHEGDLVFITTTPSHAMETNVAKTRDMIYRSGADVKSISDEL
NSSGHASKNDLQLMMNLLKPRYVLPVQGEYRLLAANAHAATEVGIPAENIFLLAKGDVAE
YTRGKMLVASSVEVGNTMIDGIGVGDIGNIVLRDRKILSEDGIFIAVVTIDRKKKKIVDR
PKITSRGFVYVKTSRDLIAESADIITKTVQSNLDNKEFDWGHLKQDVREQLNHFLYEQTK
RHPVILPVIMEINQYHGHGKNKKNNDPHK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaagatcatttcacttggtggcgtacgtgaaaatgctaagaatatgtat
gctattgaagtgaatgatgatatttacatcctagattgtggattgaaatatcctgaaaat
gaattattagggatcgatatcgtgatccctgactttgaatatttacgtcaaaatgcgcgt
cggatcgtcggggtgtttttgacacatggacatgctgatgcgatcggagctttaccatat
tttgtaagtgagtttgatgtacctgtctttggttcagaattgacgatcgccttggccaaa
attgcttgtgaaaatgaagagatagcaaagaaatttaatgattttcatgttatcaatgaa
aaaacagagatcgattttccaagtgcaactgtttcgtttttcaaaacgactcattcgatc
ccagagagcctaggggtcgcattgaagacagaggaaggaacgatcgtatacactggtgat
tttaagtttgatcaaacagcttcagcgcagtatcaaactgatctagctcgtttggctgag
cttggaaacgagggtgttttagcgttactaagcgactctgcaaatgcagaaaatccaagt
gaaacggtcaatgaacgcgagatctatgattttatcagtgagacctttgagtatcgcaaa
gggcggatcatcgttgcttgtgttgcttccaatatctcacgtgttcaacaggttttggat
gctgcccaagctaacgatcgtaaagttgctttgaccgggcatgatgttgaaaaaatcgtt
cggacggctttgaaattaaataaacttcatttaccaagtgatgatattttgatcccgatc
aaagatatcaaacgctatgatgatgatcagatcgttatcttagaggcagggcgttcaggc
gagccactgaagtctttacaaaaaatggctttaaaacggcatcgttctgtttcgttgcat
gaaggtgatcttgtctttatcacgacaacgccatcacatgcaatggagacaaacgtggct
aaaacacgtgatatgatctatcgttctggggctgacgtcaaatcgatctcagatgaattg
aattcttctggtcatgctagcaaaaatgacttgcagttgatgatgaacttattaaagcca
cgttatgtgttgccggtccaaggcgaatatcgtttgttagcggctaatgcacacgcagcg
acagaagttggtattccagcagaaaatatcttcttgctagcaaaaggagatgtggctgaa
tatactcgtggaaaaatgttagttgcctcatcggtcgaagttggaaatacgatgatcgat
gggatcggagtaggtgacattggaaatatcgtacttcgtgaccgtaagatcttatctgaa
gacgggatcttcattgcggtagtcacgatcgatcgcaagaagaaaaagatcgtcgaccgc
cccaagatcacatcaagaggttttgtttacgttaaaacaagtcgagatctgatagctgaa
agtgcggatatcattaccaaaactgtgcaatcaaatcttgacaataaagaatttgactgg
ggccatttgaaacaagatgtgcgtgaacagctcaatcattttctctatgagcaaaccaaa
cgtcatcccgttattttgccagtgatcatggagataaaccaatatcatgggcatggtaaa
aacaagaagaataatgatccgcacaaataa
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