KEGG   Lagopus muta (rock ptarmigan): 125684141
Entry
125684141         CDS       T09141                                 
Symbol
KDM5B
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
lmut  Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:lmut00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lmut01009]
    125684141 (KDM5B)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lmut03036]
    125684141 (KDM5B)
Enzymes [BR:lmut01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     125684141 (KDM5B)
Protein phosphatases and associated proteins [BR:lmut01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     125684141 (KDM5B)
Chromosome and associated proteins [BR:lmut03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    125684141 (KDM5B)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_5 PHDvar_NSD
Other DBs
NCBI-GeneID: 125684141
NCBI-ProteinID: XP_048781959
LinkDB
Position
24:567241..594994
AA seq 1523 aa
MAEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLH
FTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVAEEGG
FDVVCKERKWTKIATRMGFAPGKAVGSHIRAHYERILYPYNLFQSGASLLCLQKPDLTSD
TKDKEYKPHDIPQRQSVPPSESCPPARRAKRLRAEATNIKTESDSPEARTHNLRRRMGCA
PPKCENEKETYSTVKLTEKREHAGEQEKDKSKARSKKPTSAVDLYVCLLCGSGNDEDRLL
LCDGCDDSYHTFCLIPPLHDVPKGDWRCPQCLAQECNKPQEAFGFEQAARDYTLRTFGEM
ADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKF
KVRPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWS
YSINYLHWGEPKTWYGAPGYAAEQLEDVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHG
VPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCIEHYRLLSRYC
VFSHDEMICKMASKADVLDVVVASTVQKDMAIMIDDEKMLRDKVQKLGVTDCERVAFELF
PDDERQCYKCKTTCFMSAVYCPCKPGLLVCLYHVEDLCSCPAYQYKLGYRYTLEELYPMM
NALKMRAESYNEWASNVNEALEAKISNKRSLISFKALIEESEVKKFPDNDLLRHLRLVTQ
DADKCASVAQQLLNGKRQTRYRSGGGKCPNQLTVNELRLFVRQLYALPCLLSQTPLLKDL
LDRVEAFQQQSQKLLSEEMPSAAELQELLDVSFDFDVDLPQLAELRVRLEQARWLEDVQM
ASSEQNSLTLDDMRRLIDSGVGLAPYPAVEKAMAKLQELLTVSEHWDDKARNLIKARPRQ
SLSSLAVAVKEIEEIPAYLPSGAALKDAVQKAQDWLQEVEALQVGGRVPVLDTLVELVTR
GRSIPVHLDYLPRLESLVAEVQAWKECAANTFLCENSPYSLLEVLCPRCDIGTLSLKRKQ
KKLKEPMPSTKKKSTKLESLSDLERALCESKDTASAMATLGEARLKEMEALRSLRAANEG
KVLLCGEEDAELKVCVCQKEPAAPMIQCELCRGFFHTGCVSAPHASQAPRVWLCPLCRRS
EKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTVNWQHRAQQMLYSGNLKLLQDKVGS
GLLYSRWQSAAGQLPETNKVSQTIGAMSFSMPHDWDNRTIYLHSPFSTGQQCIPLHVVST
ELDELMMEAQLLQVSLPEIQELYQILFTKQSPALQAEQKASGGPSNEKNECCRGKKDGMS
YMERKMKRRFERESFCEEKRARVRKMRTPKKKKLKLSHTKDLSSSSRMERERERLLEVQR
SSESHLVPSDTSFSEQEDSEDEDAICPAETCLQPEGEEVDWVQCDGSCNQWFHQVCVGIS
PEMAEKEDYICASCAGRGSPYRK
NT seq 4572 nt   +upstreamnt  +downstreamnt
atggccgagttcctgcccccgcccgagtgcccggtgttcgagcccagctgggaggagttc
gccgaccccttcgccttcatccacaagatccggcccatcgccgagcagaccggcatctgc
aaggtgcggccgccgccggactggcagcctccatttgcgtgtgatgttgataaacttcac
ttcacgccgaggatccagcggctcaatgagttggaggcccaaacccgcgtgaagctgaat
ttcctggaccagattgcgaagttctgggagctgcagggctgcacgctgaaaatcccccac
gtggagaggaagatcttggatttatttcagcttaacaggctagttgcagaagaaggaggg
tttgatgtcgtttgcaaggagaggaaatggaccaaaatagccacaaggatgggatttgct
cctggcaaggctgtgggttcgcacatccgcgcgcattacgagcgaattctctatccttac
aacttattccagtctggagcaagcctgctgtgtctgcagaagccggatctcaccagcgac
acgaaggacaaggagtacaaaccccacgacatcccgcagaggcagtcggtgccgccgtcc
gagagctgccctcctgctcgccgagcgaagcgcctgcgggccgaggcgaccaacattaaa
actgagtctgattctccagaggcgagaacgcataatctgagacgcaggatgggatgtgcg
cctccaaagtgtgagaatgaaaaggaaacgtacagcacagtgaaacttactgagaagaga
gagcatgctggggagcaggagaaggacaaatccaaagcccgatccaaaaaacccaccagt
gctgtggatttgtatgtgtgtctcttatgtggcagtggtaacgatgaggaccgtctcctg
ctgtgcgatggctgtgatgacagttaccacaccttctgcttaattccaccccttcacgat
gttcccaaaggggactggaggtgcccccagtgtttggctcaggagtgcaataagcctcaa
gaagcgtttggcttcgagcaggcagcccgggactacacactgcgcacgtttggggagatg
gcagatgccttcaagtccgactattttaacatgccagtccatatggtccccaccgagctg
gtggagaaggaattctggagactggtcagcaccattgaggaggacgtcactgtggagtat
ggggctgacatcgcttccaaggagttcggcagcgggttcccagttagagatgggaaattc
aaagtgagaccagaagaggaggaataccttgacagtggctggaatttaaacaacatgcct
gtgatggagcagtctgttcttgcccacatcaccgcagatatatgtgggatgaaactgccc
tggctgtatgtgggaatgtgcttctcttccttctgttggcacattgaggaccactggagc
tactccatcaactatctgcactggggagaaccaaagacgtggtatggagccccggggtat
gcagcagaacagctggaggacgtgatgaagaagcttgctccagagctgtttgagtctcag
ccagacctcttgcaccaacttgtcaccataatgaacccaaatactttgatggcccacgga
gtgcctgtttatcggaccaatcagtgtgctggagagtttgtgatcacctttccaagagct
tatcacagcggcttcaatcagggctttaattttgctgaagctgtgaacttctgcaccgtg
gattggttgccactgggccgccagtgcatcgagcattaccgcctgctgagccgctactgc
gtgttctctcacgatgagatgatctgtaagatggcctccaaggccgacgtcctggatgtg
gtggtggcatctactgttcagaaggacatggccatcatgatcgacgacgagaagatgctg
cgcgacaaggttcagaaactgggggtgacggactgcgagagggtggcgttcgagctgttc
cccgacgacgagcggcagtgctataagtgcaaaaccacttgtttcatgtctgccgtttac
tgcccgtgtaaaccagggctgctggtgtgcttgtaccatgtggaggatctttgttcctgc
cctgcctaccaatacaaactggggtaccgctacacgctggaggagctgtacccaatgatg
aacgctctgaagatgcgtgcagagtcctacaatgaatgggcttccaatgtgaacgaagcc
ctggaagcaaagatcagcaataagagaagcctcatcagttttaaggctctgatagaagaa
tcagaagtgaagaagttcccggacaacgacctgctgcggcacctccgcttggtcacacag
gatgcagacaaatgtgcctcagtagcacagcagctccttaatggcaaaagacaaaccagg
taccgctccggaggagggaaatgccccaaccagctgacggtgaatgagctgcggctgttt
gtcaggcagctctacgccctcccctgcctgctcagccagacgccgctgctgaaggacctt
cttgatcgcgtggaagcttttcaacagcaaagccaaaaactgctctcagaagaaatgccg
agtgctgcggagctgcaggagctcctggacgtcagctttgacttcgatgtggatttaccc
cagcttgctgagctgcgggtcaggctggagcaggcccgctggctggaggacgtgcagatg
gcttcgtcagagcagaactctctcactctggatgacatgaggcgcctcattgactccggt
gtcggcctggctccctacccagcagttgagaaggccatggcaaagctgcaggagctgctg
actgtgtccgagcactgggatgacaaagccagaaacctgataaaggccaggccacggcag
tcgctcagcagcctcgcagtggcagtgaaggagatagaggagatccctgcctacctcccc
agcggcgcggcgctgaaggacgcggttcagaaggcgcaggactggctgcaggaggtggaa
gctttgcaggttggaggacgtgtgcctgtcctggacacgctggtggagctggtgaccagg
ggccgctcgatcccggtgcatctggactacctgccacggctcgagtccttggtggcggag
gtgcaggcgtggaaggagtgtgcagccaacacgttcctgtgtgagaactccccgtattcc
cttctggaggtgctgtgtccccgctgcgacattgggacgctgagtctgaagagaaagcag
aagaagctgaaggagccgatgccgagcacgaagaagaagagcaccaagctggagagcctg
agtgacttagagagagctctgtgtgagagcaaagacaccgcgtcggcgatggcgacgctc
ggggaggcgcggctcaaagagatggaggcgctgcgctccctgcgggcagccaacgagggg
aaggtgctgctgtgcggcgaggaggacgcggagctgaaggtctgcgtgtgccagaaggag
ccggcagctcccatgatccagtgtgagctctgcagggggttcttccacaccggctgcgtt
tctgcaccccacgcctcgcaggctccacgcgtgtggctctgcccgctctgccgccgctcg
gaaaagccgcccttggagaagatccttcctctgctggcctccctgcagcgcatccgcgtg
cggctccccgagggggatgccctgcggtacatgatagagagaactgtgaactggcagcac
agagcacaacaaatgctgtattcagggaatctaaaacttctacaggacaaagttggctca
ggattgctgtacagccggtggcagagcgcggcggggcagctgccggagacaaacaaggtg
tctcaaacaatcggagctatgtcattctccatgcctcatgactgggataacagaaccata
tatttacattctccattttctacaggacagcaatgcatcccacttcatgtcgttagcacc
gagctggacgagctgatgatggaagcgcagctgctgcaggtttctctgcctgaaatacag
gagctgtaccagatcctattcacaaagcaaagccccgctctgcaggctgagcagaaagca
tcgggagggccgagcaatgaaaagaacgagtgctgccggggcaaaaaggatggaatgagt
tacatggagagaaaaatgaagcgccgtttcgagagagagagcttctgcgaggagaagaga
gcaagggtaagaaaaatgagaacgcccaaaaagaagaaactgaaactgagtcacacaaag
gatctgagcagcagcagcaggatggagagggagagggagcggctcctggaggtgcagcgc
agcagcgaaagccatttggttccctccgacacgtcgttctctgagcaggaggactctgag
gatgaagatgccatctgccctgcagagacgtgtctgcagcccgagggagaggaggtggac
tgggtccagtgcgatggcagctgcaaccagtggttccaccaggtgtgcgtgggcatctcc
cccgaaatggccgagaaggaggattacatctgtgccagctgcgccgggaggggctccccg
taccgcaagtga

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