Lagopus muta (rock ptarmigan): 125684234
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Entry
125684234 CDS
T09141
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125684234 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125684234 (SKIC2)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125684234 (SKIC2)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125684234 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
125684234 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
Ski2_N
Helicase_C
MTR4-like_stalk
ResIII
Motif
Other DBs
NCBI-GeneID:
125684234
NCBI-ProteinID:
XP_048782191
LinkDB
All DBs
Position
24:522297..532904
Genome browser
AA seq
1239 aa
AA seq
DB search
MELERIVLPPPGPLHLPLALLELGCAGRCELLPGPAPPRSTLPQGLPPFTPPLTAELEQR
FLQTPSWLPPHQHERAQRRWTRVPTPRALFVLEPTPVHSSVRALRDPGTGALQGFVEELH
EDAGLPSPPDTGDVPQWEGGLEEPPLELLHTQGPNEEDLDLENDLLTTPPGLKRGVEFQA
RAPGARGGAPSLCSVLGALDSLELGGTEEEEKKEGEGAGGGAPSQQPADKGGLPSPTPPL
RRADSLEELVMGEVLVPPTTATPPVPPQSEEEEWAVEEDCSVPVEDFEEKIPDPAFKWPF
RPDAFQQRAALCLERGQSLLVAAHTSAGKTAVAEYAIALARRHMTRAIYTSPIKALSNQK
FRDFRATFGDVGLLTGDVQLRPDASCLIMTTEILRSMLYNGSEVLRELEWVIFDEVHYIN
DAERGVVWEETLILLPEHVGLVLLSATIPNALEFAQWVGRTKRRRLRVLSTRQRPVPLEH
FLYTGGGGAPSPRDLFLLLDARGAFSTQGYYAAVEAQKQRASKHAQSFGAKQPHGGGSGP
GQDRAMWHSLVALLQAQGQLPAVAFTFSRGRCDAHAAALGCIDLSSAAEKGRVRGFVRRC
LARLRGGDRRLPQVLQMSELLERGIGVHHSGVLPLLKEVVEMLFSQGLVKLLFATETFAM
GVNMPARTVIFDSIRKHDGNNFRDLLPGEYVQMSGRAGRRGLDRTGTVIILCRGTVPEMA
DLHRVMLGRPSGLQSQFRLTYGTILSLQRAAALSVEGLMRNSFGEFPLRRRAAAQQRRVA
ELQQELAALGEPPQEGALDDLPQYHEAVQGLLEARAELQRRVAQSVAGLKALAPGRVVVV
CTPQHRNALGLILQVTAESGGGRTITAMVLSEKPPEEGGPPPSPPPDAPYPEDVLLNRLF
LPEGPPGAALEQLHPEDLGGIVGRTLRANPPRLLEELRRRQTARGRKDPPSPELLSALQE
LLRMAGAAAGGLPLLDPVGALQLRDPPAVEAAARARSLGAALGGFRCVHGPRFPQLYSQF
AARRRLQAQVEQLQYQLSDRSLLLLPEYRQRLGVLQALGYVADGGAVQLPGRVAALLSCH
ELLLTELLLGNVLSPLRPEEVAALLSCTVHPGRGEPPPKLPPNLQRGMEQIRAVAERVGR
LQEEWGLPQSAEDYVGQFGFGLAEVVYEWARGMPFAALAALAPLQEGAVVRCIQRLEELC
RELRRAARMLGDPGLAATMEAASGCIKRDIVFAASLYIQ
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagcggatcgtgctgcccccccccgggcccctgcacctccccctggcactg
ttggaattgggctgcgccgggcgctgcgaactgctgccgggtcccgcccccccccgcagc
acgctcccccagggcctcccgcccttcactcctcccctgacagcggagttggagcagcgc
ttcctgcagaccccctcctggctgcccccccaccaacatgaacgggctcagaggcgctgg
acacgggtgcccaccccccgcgcactgtttgtgttggagccgacgccggtgcacagcagc
gtgcgggcactgcgggaccccggcacgggggctctgcagggctttgttgaggagctgcat
gaggacgcggggctcccctctcccccagacactggtgacgtcccccagtgggaaggtggt
ttggaggaaccccccctggagttgctccacacccaggggccaaatgaagaagatttggac
cttgaaaatgatttactgaccaccccccccgggctgaaacgtggtgttgagtttcaggcc
agagcccccggagcccgggggggggcaccatcgctctgtagcgttttgggggcgttggat
tccttggagttgggggggacggaagaagaggagaaaaaagagggggagggtgctgggggg
ggtgccccctctcagcagcccgctgacaaaggagggctgccttcccccacaccccccctg
cgccgtgccgacagcctggaggagctggtgatgggggaggtgctggtgccccccaccaca
gccaccccccctgtgcccccgcaaagcgaggaggaggagtgggccgtggaggaggactgc
agcgtccccgtggaggactttgaggagaagatcccagatccagcattcaagtggccgttc
cgccctgacgccttccagcagcgcgcggcgctgtgcctggagcgggggcagtcgctgctg
gtggctgctcacacctctgctggcaaaactgccgtggccgaatacgccattgccttggca
cggcgacacatgacacgggccatctacacatcgcccatcaaggcgctctccaatcagaag
ttccgcgacttcagggccacctttggggacgtggggctgctgacaggggatgtgcagctg
cgccccgacgcctcctgcctcatcatgaccactgagatcctgcgctcaatgctgtacaac
ggctctgaggtgctccgtgagctggagtgggtcatcttcgacgaggtgcactacatcaac
gacgctgagcgcggcgtggtgtgggaggagacgctgatcctgctgcctgagcacgtgggg
ctggtgctgctcagtgccaccatccccaatgccctcgagttcgcccagtgggtcggccgc
acgaagcggcgccgcctgcgggtgctgagcactcggcagcgcccggtgcccctcgagcat
ttcctctacaccggcggcggcggagccccctcaccccgcgatctcttcctgctgctggat
gcgcggggtgccttcagcacccaggggtactacgccgcggtggaggcgcagaagcagcgg
gcgagcaaacacgcgcagagctttggggccaaacagccccacggggggggcagcggccct
gggcaggaccgtgccatgtggcactcgctggtggcgctgctgcaggcgcaggggcagctc
ccggccgtggccttcaccttctcccgcgggcgctgcgatgcacacgcagccgccctgggc
tgcattgacctcagctcagccgccgagaagggacgcgtgcggggcttcgtgcggcgctgc
ctggcccggctccgggggggggaccgccgcctgccccaggtgctgcagatgtcggagctg
ctggaacgtggcatcggggtgcatcacagcggggtgctgccgctgctcaaggaggtggtg
gagatgctcttcagccaggggctggtcaagctgctctttgccaccgagaccttcgccatg
ggggtgaacatgccggcgcgcaccgtcatcttcgactccatccgcaaacacgacggcaac
aacttccgcgacctgctgccaggtgagtacgtgcagatgtcggggcgcgccgggcgccgt
gggttggaccgcaccgggactgtcatcatcctgtgccgggggacggtgcccgaaatggcc
gacctgcaccgcgtcatgctgggccgcccatcggggctgcagtcgcagttccgcctgacg
tacggcaccatcctcagcctgcagcgtgcggccgcgctcagcgtggaggggttgatgcgc
aacagctttggagaattccccctgcggcgccgcgctgcggcgcagcagcggcgcgtggct
gagctgcagcaggagctggcagcactgggggagcccccgcaggagggagccctggacgac
ctcccccagtaccacgaggccgtgcaggggctgctggaggcacgggcagagctgcagcgc
cgcgtggcgcagtcagtggcagggctgaaggcgttggcccccgggcgggtggtggtggtc
tgcaccccccagcaccgcaatgcgctggggctcatcctgcaggtgactgctgaaagcggg
gggggccgcaccatcacagcgatggtgctgagtgagaaaccccccgaggagggtgggccg
cccccctcgccccccccggatgccccctaccctgaggatgtgctgctgaatcggctcttc
ctgcctgagggcccccctggagcagcgctggagcagctgcaccccgaggacttggggggc
attgtggggcgcacgctgcgggcaaaccccccccggctgctggaggagctgcggcggagg
cagacagcacggggaaggaaggacccccccagccccgagctgctctcagccctgcaggag
ctgctgcgcatggcaggggcggctgcgggggggctgcccctgctggacccagtgggagcc
ctgcagctgcgggacccccctgccgtggaggcagctgcccgtgcccgaagcctgggggcg
gccctgggggggtttcgctgtgtgcacggcccccgctttccccagctgtactcgcagttc
gctgcgcggcgccggctgcaggcacaggtggagcagctccagtaccagctgtcggaccgc
tccctgctgctgctgcccgagtaccggcagcgcctgggcgtgctgcaggctctgggctac
gtggccgacggcggtgcggtgcagctccccgggcgcgtggcggcgctgctgagctgccac
gagctgctgctgaccgagctgctgctgggcaacgtgctgagcccgctgcgccccgaggag
gtggccgcgctgctgtcctgcaccgtgcatccgggccggggcgagccgcccccaaaactg
cctcccaacctgcagcggggcatggagcagatccgcgccgtggccgagcgcgtggggcgg
ctgcaggaggagtgggggctgccccagagcgccgaggactacgtggggcagttcggcttc
gggctggccgaggtggtgtacgagtgggcgcgcggcatgcccttcgccgctctggccgcc
ctggctccgctgcaggagggcgcggtggttcgctgcattcagcgcctggaggagctgtgc
cgggagctgcgccgcgccgcgcgcatgttgggcgacccggggctggcggccaccatggag
gcggcgagcggctgcatcaaacgggacatcgtcttcgccgcgagtctctacattcaataa
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