Lagopus muta (rock ptarmigan): 125684431
Help
Entry
125684431 CDS
T09141
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125684431 (CASC3)
03015 mRNA surveillance pathway
125684431 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125684431 (CASC3)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125684431 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
125684431
NCBI-ProteinID:
XP_048782519
LinkDB
All DBs
Position
25:complement(824726..833603)
Genome browser
AA seq
721 aa
AA seq
DB search
MADRRRQRASQDSEDDSDSAASDSGDSAASPARSRSGSASPRPSHRPPRGAAGALSAGPR
GRGAESAAGGGAAKSAPQSECESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESAKVELK
QDSNDSCESAAKAEKGDEKLDSKGAVTGERQSGDGQESTEPVENKVGKKAPKHLDDDEDR
KNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKTRQEL
IALYGYDIRSAHNPDDIRPRRMRKPRFGSPQRDPNWSNERPNKPPRHQGSDGTSAAPRTF
TSRSSAGTGRMPPPRNYPRVGGYKETRPGYRASEASVQHPSRNGEQGKQESGYRAKRSEQ
SPPREKSPEVEAGHVHGSPVKEEGALENQSDAVQPPPDRPIEKKSYSRARRTRVKAGDAG
KLADDVPALEAPATPKPVQAEASPPPAKNSNWESPVESSLDGLEQEMIQMNLTEQNWSPG
QSQFLQPRELRGIPNHLHVGTGPPPQFNRMEEMAVQGGRAKRYSSQRQRPPVPEPAPPMH
ISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQPEMHLPHPGLHPHQPAAPMANPGL
YPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPGYPYPPGALPPPPPPHLYSNTQQAQS
QVFGGVTYYNPVQQQVQPKPSPPRRTSQPVTIKPPPPEVPPLAPLLVPFPVPSARLPAAV
P
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacgactcggactcggcc
gcatccgacagcggcgactccgccgccagccccgcccgctcccgctccggctccgcttcg
ccgcggccttcgcaccgccctccgcgaggcgccgccggagctctgagcgcggggccgcgg
ggccgcggggccgaaagcgccgccgggggaggggcggccaaaagcgctccgcaatccgag
tgtgaaagcgaggacggcatcgaaggcgatgctgtgctgtcagattatgaaagcgcagag
gactcagaggcagaggaagaggattacagcgaggaagaaagtgccaaagtggaactgaag
caggatagcaatgattcctgtgagtctgcagcaaaagcagagaaaggggatgagaaactg
gactcgaaaggtgccgtaaccggtgaaaggcaaagtggggacgggcaggagagcaccgaa
cctgttgagaataaagttgggaaaaaagctcccaagcacctggacgacgacgaggatcgg
aagaacccggcttacatcccacgcaaagggctcttctttgagcacgatctccgagggcag
acgcaggaggaggaggtcaggccgaagggtcggcagcggaagctgtggaaggatgaaggc
cgctgggagcacgacaagttccgggaggacgagcaggcccccaaaaccaggcaggagctg
attgctctgtatggctacgacatccgctctgctcacaaccctgacgacatcaggccgagg
aggatgcgcaaaccgaggtttgggagcccccagcgagaccccaactggtccaacgagcgg
cccaacaagcccccccggcaccagggctcagacggcacttctgctgccccacgaaccttc
accagcaggagctctgcgggaacggggaggatgccccctcccaggaactacccgagggtg
gggggctacaaggaaacccgcccaggataccgagcttcagaagccagcgtgcagcacccg
tcccgaaatggtgagcagggcaaacaggagagcggctatcgagcgaaacgttcggagcag
agcccaccgagagagaagtcaccagaagtggaagcagggcacgtccacggcagccctgtc
aaggaggagggcgccctggaaaaccagagcgacgccgtgcagccgccgccagacagacca
atagaaaagaagtcttattcccgggcaaggaggaccagagtcaaagctggggacgcaggg
aagctggcggatgacgtgcctgctctggaagctcccgcgacaccaaaacctgtccaagct
gaggcgtcccccccgccggcaaagaacagcaactgggagtcgccagtggaatccagcttg
gatggacttgagcaggagatgattcagatgaatctgacggagcagaactggagcccgggg
caatctcagttcttacagccccgggagctgcggggtattcccaaccatctgcacgtggga
actgggccgccccctcagttcaacaggatggaggaaatggcggtgcagggcggccgtgcc
aagcgctactcctcgcagcggcagagacccccagtgccagagccggccccccccatgcac
atcagcatcatggaggggcactactacgacccactacaattccagggaccaatctacacc
cacagtgagaacccggccccgctgccgccccaggggatgatcgtgcagccagaaatgcac
ctccctcatccaggtttacatccccaccagccagcagccccgatggcaaaccctggcctc
taccccccgccggtctccatgcccccagggcagcccccgccgcagcagctgctcgccccg
acttacttctccccgcctggagtcatgaattttgggaatcctggctacccgtacccccca
ggagcgctgcccccgccgccccctccgcacctctattccaacacccagcaggcgcagtcc
caggtgtttgggggggtcacgtactacaaccctgtccagcagcaagtgcagcccaaaccc
tcaccgccgcgcaggacgtcgcagcccgtcaccatcaagccgccgcctcccgaggtaccg
cccctcgcccctctgctcgtccctttccccgtcccttctgcccgtctgcctgctgctgtc
ccctga
DBGET
integrated database retrieval system
