Lagopus muta (rock ptarmigan): 125685126
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Entry
125685126 CDS
T09141
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125685126 (UPF1)
03015 mRNA surveillance pathway
125685126 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125685126 (UPF1)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125685126 (UPF1)
5.6.2.5 RNA 5'-3' helicase
125685126 (UPF1)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125685126 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
125685126 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
125685126
NCBI-ProteinID:
XP_048783898
LinkDB
All DBs
Position
26:1200718..1220160
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGAGQAGPGQAQG
APGAGQGPAGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacggccccagctcgcagaccctcaccttcctggacacggaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccaaaccccgcccggagccgggcaggcggggcccggccaggcccaaggc
gctccgggagcgggacagggccctgcaggccccatcgaggcccaggttaatggacctgat
ggcattctgcagaacggagcagtggatgataacgtcgctaaaaccagccagcttctggca
gagctgaactttgaagaagatgaagaagatacttactatacaaaggatcttcccgtgcat
gcttgcagttactgtggtatccatgaccctgcctgcgtggtttactgcaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacatcgtcaaccatctggtg
agagcgaagtgcaaggaggtgactctccataaagatgggcctctaggagagactgtcctg
gaatgttacaactgcgggtgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgcaagtcagagcagtttaaaggat
attaactgggacagttcacagtggcagcctcttatccaagatcgctgtttcctctcgtgg
ctggtaaagattccatctgagcaggagcagctgagagcacgtcagattacagctcagcag
atcaacaaactggaagaactctggaaggaaaatccatctgcaacccttgaggacttagag
aagcctggtgttgatgaagagccacagcacgtcctgcttagatacgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaagcttaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaataagaaaaga
attgcttatttcactctgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtacaaaggagacctggcccctctgtggaaaggaatcggccatgtcatc
aaagttcctgatagttctacagattatggtgatgagattgccatcgagctgaggagcagc
gttggagcccccgtggaggttactcataacttccaagtggattttgtgtggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcggtgtca
ggatacatctatcacaaactgttgggccacgaggtggaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggtactggaaaa
acagtgacatcagctaccattgtctatcatctggctagacagggcaatgggcctgtgtta
gtgtgtgctccaagtaacattgctgtagatcagttgacagagaagatccatcagactggt
ctgaaagtggttcggctgtgtgctaaaagccgtgaggcaattgactcacctgtatccttc
ttggcactgcataaccagatcagaaacatggatagcatgccagagcttcagaagctgcaa
caacttaaagatgaaactggagaactgtcatctgccgatgagaaacgctaccgtgcgctg
aaacgaacagcagagcgtgaattgctcatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaaggcttgcaaaaatgcagttccgctccattctgatcgatgaaagc
acccaggccactgagccagagtgcatggtgccagttgtgctgggagcaaagcagcttatt
cttgtaggtgaccactgccagctggggcctgttgtgatgtgtaagaaagctgccaaggca
ggcctgtctcagtccctgtttgagaggctggtggtgctggggattcgccccatccgcctg
caggtgcagtaccgcatgcacccagccctgagtgctttcccatccaacatcttctatgag
ggttcgctccagaatggtgtcactgcagctgaccgtgtgaagaaagggtttgatttccag
tggccgcagccagacaagccaatgtttttctatgttacacaagggcaggaagaaatcgcc
agctcgggcacctcttacttgaacagaacggaagctgccaacgtggagaagataactaca
aagcttttgaaagctggtgccaaacctgatcagattggcattattactccttatgaaggc
cagcgatcttatctggtgcagtacatgcagttcagtggttccttgcatacaaaactttac
caggaagtagaaattgcaagcgtggatgccttccaaggacgagagaaggactttattatc
ctgtcttgtgtgagggccaacgaacaccaagggataggatttctgaatgaccccaggcgt
cttaatgtggctcttacaagagcaaggtatggggtaattattgttgggaacccgaaagct
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggagagcctcatgcaattcagcaagccccgaaaa
cttgtcaacaccatcaacccaggcgcccgcttcatgaccactgccatgtatgatgcacgt
gaagctattattccaggatccgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgatcagtgcaggccccagccacgtcactgct
atgaacattcccatccccttcaacctcgtgatgcccccaatgcccccaccagggtacttt
gggcaggccaacggcccggctgcaggacgtggggcacccaaagggaagaccggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaacgagtcaatcaaaccttcccaatagc
caggcgagccaagacgtggtgtcccagcccttctcccagggtccactgactcagggctat
atctccatgagtcagccatctcagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagttcaagtctcagattgacgtggcgctgtcacaggac
tccacctaccagggggaacgcgcgtatcaacatggcggagtgacgggactgtcacagtat
tag
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