Lagopus muta (rock ptarmigan): 125685196
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Entry
125685196 CDS
T09141
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125685196 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125685196 (SNRNP200)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125685196 (SNRNP200)
Spliceosome [BR:
lmut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125685196 (SNRNP200)
Complex C
U5 SnRNP specific factors
125685196 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
125685196
NCBI-ProteinID:
XP_048784038
LinkDB
All DBs
Position
27:complement(1536782..1559259)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPII
VFVPSRKQTRLTAINILTTCASDVQRHRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYL
HEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
THNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSESD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgctcgcagcctgcagtacgagtacaaggcgaactccaacctcgtg
ctccaagctgaccgctctctcattgaccggacgcggcgtgatgaacccacaggagaggtg
ctctccctggtgggcaaactggagggcacccgtatgggagacaaggcgcaacgcaccaag
ccgcagatgcaggaggagcgacgtgccaagagaaggaagcgcgacgaggacaggcacgac
atcaacaagatgaagggttacaccctgctgtctgagggcatcgacgagatggtggggatc
atctacaaacccaaaaccaaggagacccgggagacctacgaggtgttgctgagcttcatc
caggccgccctcggggaccagcctcgagacattctgtgcggggctgccgacgaggtgctg
gcggtgctgaagaacgagaagctgcgcgataaggagaggcgcaaggagatcgatctgctg
ctgggccagaccgacgacacccgttaccacgtgctggtgaacctgggcaagaagatcacg
gattacggtggcgacaaggagattcagaacatggatgacaacattgatgagacgtacggc
gtgaacgtgcagtttgagtcggatgaggaggaaggcgatgaggacatctatggcgaggtg
cgggacgaggcctctgatgatgacatggaaggagacgaagccgtcgtccgctgcacgctg
tcagccaaccttgtggcatcgggtgaattgatgagctcaaagaagaaggatctgcatccg
cgggacatcgacgccttttggctccagcggcagctgagccgcttctatgatgatgccatc
gtttcccagaagaaggcagatgaagtgctggagatcctgaagaccgcaagtgatgaccgg
gagtgtgaaaaccagcttgttctgctcctgggcttcaacaccttcgacttcatcaaagtg
ctgcggcagcaccggatgatgatcctgtactgcactttgctggccagcgcccaaagcgaa
gccgaaaaagaaaggatcatggggaagatggaagcagatcctgagctgtccaagttcttg
tatcagctgcacgagacggagaaggaggatctgatccgggaggagcgctcccgccgggaa
cgcgttcggcagtccaggatggacactgacttggagaccatggatctggaccaaggagga
gaggcgttggctccccggcaggtgctggatttggaggacctggtgtttgctcagggcagt
catttcatggccaacaaacgatgccagctgcccgatggctccttccgaaggcagcgcaag
ggctacgaggaggtgcacgtgcctgccctgaaaccaaagccttttggctcggaggagcaa
ttggtttcagtggaaaagctgcccaaatacgcccaggctggatttgaagggtttaaaaca
ctgaaccgcatccagagcaaactgtaccgcgctgccttggagtcggatgagaatctgctg
ctttgtgctcccacgggcgccgggaagacgaacgtggcgctgatgtgcatgctgagagaa
atagggaagcacatcaacatggatggcaccatcaacgtggatgagttcaagatcatctac
atcgcacccatgaggtctttggtgcaggagatggtgggcagctttggaaagcgcctggca
acctacggcatcaacgtggccgagctgacgggggatcaccagctgtgcaaggaggaaatc
agtgccacccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaagggg
ggggagcgcacgtacacccagctggtgcggctggtcatcctggatgagatacatctcctg
cacgacgacagagggcctgtgctggaatctttggttgccagagccatccgtaacattgag
atgacccaggaggatgtcaggcttgttggcttgagtgccaccctccccaactacgaggac
gtggcgacgttcctccgagtggaccctgccaagggcctgttctattttgataacagcttc
cgaccggtgcccctggagcagacctacgtgggcatcacagagaagaaagcaatcaaacgc
ttccagataatgaatgagatcgtttatgagaagattatggagcacgctgggaagaaccag
gtgctggtgttcgttcactccaggaaggagactggcaagacagcgcgggccatcagggac
atgtgcctggagaaagacaccctgggcctcttcctgagagagggctcagcctccaccgag
gtgctgaggacggaagctgagcagtgcaagaacctggagctgaaggacctcctgccctac
ggctttgccattcaccatgctgggatgacacgagtggaccggaccttggtggaggatctg
tttgctgacaaacacatccaggttttggtgtctacagcaacgctggcctggggtgtgaac
ctccctgcccacactgttatcatcaagggcacgcaggtgtacagccctgagaaggggcgc
tggactgagctgggggctttggacatcctgcagatgctggggcgtgctgggaggcctcag
tatgacaccaaaggtgaggggatcctcatcacatcccacggcgagctgcagtattacctg
tccctgctcaaccagcagctccccatcgaaagtcagatggtgtcgaagctgccagacatg
ctgaatgcagaaactgtgctgggcaacgtccagaacgcaaaggatgcagtgaactggctt
ggctatacctacctgtacatccggatgctgcgttcccccactctctatgggatttcccac
gatgatttgaagggggatccactgctggaccagcgccgcttggatctggttcacaccgca
gccctgatgttggacaagaacaacctggtgaagtacgacaagaagacggggaacttccag
gtgacagagctgggccgcattgccagccactactacatcaccaatgagacaatgcaaacg
tacaaccagctcctgaaacccaccctgagtgagattgagctgtttcgggtcttctcgctg
tcctcagagttcagaaacatcacagtgagggaggaggagaagcttgagcttcagaagttg
ctggagcgagtcccaatccccgtgaaggaaagcatagaggagcccagtgccaagatcaac
gtgctcctccaggccttcatctcccagctgaagctggaaggctttgctctcatggcagac
atggtgtacgttacccagtctgcagggcggctgatgcgtgccatcttcgagatcgtcctg
aaccgcggctgggctcagctcaccgataagaccctcaacctctgcaagatgatcgacaaa
cggatgtggcagtcgatgtgccctctgcgccagttcaagaagctgcccgaggaagtggtg
aagaagattgagaagaagaatttcccctttgagaggctctatgacctgaaccacaatgaa
ataggagaactgatccgcatgcccaagatgggcaaaacgatccacaaatacgtccatctg
ttcccaaagctggagctctctgtccacttgcagcccattacccgctctaccctgaaagtg
gagctcaccattgcccccgacttccagtgggatgagaaggtgcacggctcgtctgaagcc
ttctggatcctggtggaggacgtggacagcgaggtgatcctgcaccacgagtacttcctg
ctgaaggccaaatacgcgcaggacgagcacctcgtcaccttcttcgtgcccgtcttcgag
cccctgccccctcagtacttcatccgggtggtgtctgaccgctggctctcctgtgagacc
cagctgcccgtttccttccgccacctgatcctccctgagaagtacccccctcccacagag
ctgctggacctgcagcctctgcccgtttctgctctgaggaacagcgccttcgagagcctc
taccaggacaagttccctttcttcaaccctatccagactcaggtgtttaacaccgtctat
aacagcgacgacaacgtgtttgtgggcgcccccacgggaagcgggaagaccatttgtgct
gagtttgccatcctcaggatgttgctgcagaactcggagggacgctgtgtgtacatcacc
cccatggaggccctggcagagcaggtcttcatggactggtacgaaaagttccaggagcgt
ctcaataaaaaggtggttttgctgactggggagaccagcactgacctgaagctgctgggc
aaagggaacatcatcatcagcacccctgagaagtgggacatcctgtcccggcgctggaag
cagcgcaagaacgtccagaacgtcaacctcttcatcgtggatgaagtgcacctcattggg
ggcgagaatgggcccgtgctggaggtcatctgctcccggatgcgctacatctcctcgcag
atcgagcggcccatccgcatcgtggccctcagctcatccctgtccaacgccaaggacgtg
gcgcactggctgggctgcagtgccacctccaccttcaacttccaccccaacgtccgcccc
gtgcccttggagctgcacatccagggtttcaacatcagccacacgcagacccgcctgctc
tccatggccaagccggtttaccacgccatcatgaagcactctcccaaaaagcccatcatc
gtcttcgtgccgtcccgcaagcagacgcggctcacggccatcaacatcctcaccacgtgt
gcctcagacgtgcagagacacaggttcctgcactgtgcagagaaggacctggtgccctac
ctggacaaactgaatgacaacaccctgaaggagacgctggtgaatggtgtgggctatctg
cacgaggggctgacggccatggagcggcgggtggtggagcagcttttcagctctggtgca
gtgcaggtgatggttgcctcccgcagcctctgctggggtatgaacattgcagctcacctg
gtgatcatcatggacacgcagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgtgctgcagatggtgggccacgccaaccgcccgctgcaggacgatgagggc
cgctgcgtcatcatgtgccagggatccaagaaggatttcttcaagaagttcctttatgag
cccctgccagtggaatcccacctggaccactgcatgcacgatcacttcaacgccgagatt
gtcaccaagaccattgaaaacaagcaggatgcagtggattacctgacttggacgttcctg
taccgcaggatgacgcagaatcccaactactacaacctgcagggtgtgtcccataggcac
ctttctgaccacctctcggagctggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggctcccctcaacctggggatgattgcagcc
tattattacatcaactacaccacgattgagctcttcagcatgtccctcaatgccaaaacc
aaagtgcgagggctgatagaaatcatctccaacgctgctgagtatgagaacatccccatc
cggcaccacgaggacaacctgctgcgccagctggcccagaaggtcccccacaagctgacc
aaccccaaattcaacgacccccacgtcaagaccaacctcctgctgcaggctcacctatcg
cgcatgcagctgagcgccgagctgcagtcggacacggaggagatcctcagcaaggcaatc
cggctgatccaggcgtgtgtggacgtcctgtccagcaatgggtggctgagccctgccttg
gccgccatggagctggcacagatggtgacccaagccatgtggtccaaggactcctacctc
aagcagctgcctcacttcacctctgagcacatcaagcgctgcactgacaagggggtggag
agcgtgtttgacatcatggagatggaggacgaggaccggaacgcgctgctgcagctctcg
gatgcgcagatcgccgacgtcgcccgcttctgcaaccgctaccccaacatcgagctgtcc
tacgaggtggtggagaaggaaagcatccggagcggaggccccgtggtggtgctggtgcag
ctggagcgtgaggaggaggtcaccggccccgtcatcgcccccctgttcccccagaaacgt
gaggagggctggtgggtggtgatcggcgactccaagtccaacagcctcatctccatcaag
cggctgacgctgcagcagaaggccaaggtgaagctggatttcgtggccccggccacaggg
acgcacaactacacgctgtacttcatgagcgacgcctacatgggctgcgaccaggagtac
aaattcagcgtggatgtgaaggaggccgagagcgacagcgaatctgattaa
DBGET
integrated database retrieval system
