Lagopus muta (rock ptarmigan): 125685437
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Entry
125685437 CDS
T09141
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmut03016
]
125685437 (RTCB)
Enzymes [BR:
lmut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125685437 (RTCB)
Transfer RNA biogenesis [BR:
lmut03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125685437 (RTCB)
Prokaryotic type
tRNA splicing ligases
125685437 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
125685437
NCBI-ProteinID:
XP_048784425
LinkDB
All DBs
Position
1:52474179..52485552
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagttgcagtacttggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtagagggagttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcattgcctggaatcgttcat
agatccataggtctcccagatgttcactctggctatggctttgccattggcaacatggca
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggattcgacatc
aactgcggtgtccgcttactgcgtacgaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgtcggtgttggttcaaagggtgtc
atccccatgaacgccaaggatttggaagaggctctagagatgggtgtagactggtctctc
cgggaaggctatgcctgggcagaggacaaggaacactgtgaggagtatggaagaatgctg
caggctgatcccaacaaagtgtcttccagagcaaagaagaggggcctgcctcagctgggg
accctgggagcaggaaatcactatgctgagatccaggttgtggatgacatttacaatgaa
tatgctgccaggaagatgggcatcgaccacaaaggacaggtttgcgtcatgatccacagt
ggcagcagaggcttgggccatcaggttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcgccagctagcatgtgccaggattgcctct
gtggagggacaggattacttgaagggaatggcagctgctggaaactatgcgtgggtcaac
cgctcttctatgactttcttaacaagacaggcttttgccaaagtcttcaacacaacccca
gatgacctcgatatgcacgttatctacgatgtgtctcacaacattgccaaagtggagcaa
cacgtagtggacgggaaggaaaggactctactggtgcacagaaaaggatcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcctgttctg
attggtgggactatgggcacatgtagctacgttcttactggcacagagcaaggcatgact
gagacgttcggaactacttgccacggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtactggacaaactggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcacctgagtcttacaagaatgtgacagat
gtcgttaatacctgccatgcagctggcatcagcaagaaagccattaagttgagacctatt
gctgttataaaaggctag
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