Lagopus muta (rock ptarmigan): 125685512
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Entry
125685512 CDS
T09141
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125685512 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125685512 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125685512 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125685512 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
125685512
NCBI-ProteinID:
XP_048784544
LinkDB
All DBs
Position
28:complement(2672927..2692128)
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AA seq
1501 aa
AA seq
DB search
MHGRRPPRSAALFLXLLLLTAVAAAQDRDLPEAAGGCVQDGQSYSDKDVWKPEPCRICVC
DTGTVLCDEIICEELRDCPSPEIPFGECCPVCPAEPPAAARQPGPKGQKGEPGDIKDVVG
PRGPPGPQGPAGEQGQRGDRGEKGGEGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAG
PMGPRGPPGPPGKPGDDGETGKPGKSGERGPPAPSSPXPYSSPQGARGFPGTPGLPGVKG
HRGYPGLDGAKGEAGAPEPRXGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGND
GLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAP
GNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ
GPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPK
GAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRP
GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA
GPVGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGER
GSPGAAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGD
RGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGE
PGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA
RGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGVRGDAGPPGRAGDPGL
QGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGK
QGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGA
PGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGE
RGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGP
PGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAG
GLRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGC
TLDAIKVFCNMETGETCVYPTPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDENL
SPNTASIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGN
SRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCF
L
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgcacggccgccgcccgccccgctccgccgctctcttcctcnntctcctcctcctcacg
gccgtcgcagccgcgcaggaccgcgacctcccggaggccgccgggggctgcgtgcaggac
gggcagagctacagcgacaaggacgtttggaagccggagccgtgccggatctgcgtgtgc
gacacggggaccgtgctgtgcgacgagatcatctgcgaggagctgcgggattgccccagc
cccgaaatccccttcggagaatgctgccccgtctgccccgcagagccgcccgccgccgcc
cgacaacctggccctaagggacagaagggagaacccggagatattaaagatgttgtagga
ccccgagggcctcctggaccgcagggcccagcaggagagcagggacagcgaggggaccgc
ggtgagaaggggggagagggtgctcctggccctcgtggaagggatggagaacctggcacc
cctgggaaccccggcccccccggcccccctggacctcctggaccccctggacttggtgga
aactttgcggcgcagatggcgggcggcttcgatgagaaggcgggtggagcgcagatgggc
gtcatgcagggacccatgggccccatgggaccccgcggcccccctggccccactggtgca
cctggtccccaaggatttcaaggcaaccccggtgagcccggtgaacccggtgctgctggt
ccaatgggtccccggggacctccgggaccacctgggaaacccggtgacgacggtgagaca
ggcaaacccggcaaatctggtgaacgtggcccccccgcccccagttcaccttaaccctat
tcttccccacagggcgctcgtggcttccctgggactcctggtctccccggagtgaaaggc
caccgaggttaccccggtttggacggtgccaaaggagaggctggggctccggagccaagg
tgaggtgaatctggttcaccgggtgagaacggctcccccggccctatgggaccccgtggg
ctgcctggagagcgaggacgtcccggcccctctggtgctgcgggtgctcgaggcaatgac
ggcctccccggccctgctggaccccctggacccgtcggccctgccggagctcctggcttc
cccggagcccccggttcgaagggtgaagccggccccactggcgcacggggtcctgaggga
gcccaaggaccccgcggcgaatccggcacccccggctctcctggccccgctggcgcaccc
ggtaaccctgggactgatggcatcccaggtgccaagggctcagcgggcgccccaggcatt
gcaggcgctccaggattccccggccctcgcggcccccccggaccccaaggtgccaccgga
ccactgggacccaaaggacagacgggtgaacccggcatcgcaggcttcaagggcgagcaa
ggaccgaagggcgagacgggccccgcaggaccccaaggtgcccccgggccggctggcgag
gaaggcaagagaggagctcgtggtgaacctggtgccgctggccctgtgggcccccctgga
gaaaggggcgctcctggcaatcgtggattccccgggcaggacgggctggccggacccaag
ggtgctccaggtgaacgcggccccgctggtctcgccggtcccaaaggtgccaccggtgac
cctggacgtcctggagagcctgggctgcccggagcgaggggtctcaccggccgccctggc
gatgcgggacctcaaggcaaagtcggtccgactggtgctcctggcgaggatggccgcccc
ggccctcccggccctcagggtgctcgtgggcagcccggtgtgatgggtttccccggtccc
aaaggcgctaatggtgagcctggaaaagctggagagaaaggactgcctggcgccccaggg
ctgcggggtcttcctggtaaggatggggagacaggagctgctggaccccccggacccgct
ggtcctgtgggtgagagaggagagcaaggagcccccggtccttctggattccagggactg
cctggaccaccaggtccccctggagagagcggcaaacccggagaccagggtgttcctgga
gaagctggtgcccccggtcttgttggtcccagaggtgaacgtggattccccggtgaacgc
ggctctcctggtgccgcccaagggctgcagggtccccgtgggctgcctggaacgcctggc
actgatggacccaagggtgcgaccggtccggctggtcccaacggtgcccagggtccccca
gggctgcagggaatgcctggtgagagaggagcagctggcatcgctggccccaaaggtgac
cggggagatgttggtgagaaaggacccgaaggagctccgggcaaggatggcgcacgtggt
ctgacgggtcccattggtccccctggccctgctggccccaacggcgagaagggtgaatcc
ggccctcctggtccatctggtgctgccggtgcccgtggagcccccggcgagcgtggcgag
cccggtgcccctggtcctgctggatttgctggcccccctggtgccgacggacaacccggt
gccaaaggcgagcagggagaacccgggcagaagggtgacgccggtgctcctggtccccaa
ggtccctccggcgctcctggccctcagggtccaactggtgtcaccggtcccaaaggagct
cgtggggctcagggtccccctggagccacaggattccccggagccgccggccgcgtggga
ccacccggccctaatggtaacccaggcccccccggaccccctggctctgctggcaaagat
ggccccaagggtgttcgtggtgatgctggcccccctggccgtgctggagaccccggcctc
caaggccccgccggcccccctggcgagaagggcgaacctggcgaggacggccccgcgggt
cccgacggccccccagggcctcaaggcttggcaggacagcgtggtatcgtgggtctccca
ggacagcgtggtgagagaggcttccctggacttccagggccatcgggagaacctggaaag
caaggagcacctggctctgcaggcgaccgaggtccccctggccccgtgggcccccctggg
ctgacaggtcctgctggagaacccgggcgtgagggcaaccccggtgctgacggaccccca
ggcagggatggtgcagctggcgtgaagggtgaccgtggtgagaccggccctgtgggtgcc
cccggtgcccccggagcccccggtgctcctggtcctgttggtcccaccggaaaacaagga
gacagaggcgagacgggtgcacaagggcccatgggtccctctggtcccgctggagctcga
ggaatgccgggtccccaagggcctcgtggtgacaaaggtgagacaggagaggctggagag
agagggctgaagggccaccgcggcttcaccggtctgcagggtctgcccggaccacccggc
ccttctggagaccaaggtgctgccggtcccgctggtccctccggtcccagaggtccccct
ggtcctgtcggcccctctggcaaagatggctccaatggcatgcccggccccatcggtcct
cccggtccccgcggacggagcggtgaacctggccctgcgggtcctcctggaaatcctggt
cctcccggtcctcccggccccccaggcaccggcatcgacatgtcagcttttgccggactg
ggtcagacagaaaagggccccgaccccatccgctacatgagggcagacgaggcggccgga
ggactgcggcagcacgacgtggaggtggacgccacgctcaaatccctcaacaatcagatc
gagagcatccgcagccccgagggttccaagaagaacccagccaggacctgccgcgacatc
aagctctgccaccccgactggaagagtggagattactggattgacccgaaccagggctgc
accttggacgccatcaaagttttctgcaacatggagacgggcgagacctgcgtctacccg
acccccagcagcatccccaagaagaactggtggaccagcaagacaaaggacaagaagcac
gtctggtttgcagagaccatcaacggcggtttccacttcagctacggcgatgagaacctg
tcccccaacaccgccagcatccagatgaccttcctgcgcctcctgtccaccgagggctcc
cagaacgtcacctaccactgcaagaacagcatcgcctacatggacgaggagacgggcaac
ctgaagaaagccatcctcatccagggatccaacgacgtggagatcagagctgagggcaac
agcaggttcacctacagcgtcttggaggacggctgcacgaaacacactggcaaatggggc
aagactgtcatcgagtaccggtcgcagaagacctcgcgcctgcccattgtagatattgca
cctatggacattggcggagccgagcaggagtttggcgtggatattggcccagtctgcttc
ttgtaa
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