Lagopus muta (rock ptarmigan): 125685582
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Entry
125685582 CDS
T09141
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03030
DNA replication
lmut03410
Base excision repair
lmut03420
Nucleotide excision repair
lmut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125685582 (LIG1)
03410 Base excision repair
125685582 (LIG1)
03420 Nucleotide excision repair
125685582 (LIG1)
03430 Mismatch repair
125685582 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmut03032
]
125685582 (LIG1)
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125685582 (LIG1)
Enzymes [BR:
lmut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125685582 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
125685582 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125685582 (LIG1)
DNA replication proteins [BR:
lmut03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125685582 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125685582 (LIG1)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125685582 (LIG1)
NER (nucleotide excision repair)
Other NER factors
125685582 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
125685582 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
Motif
Other DBs
NCBI-GeneID:
125685582
NCBI-ProteinID:
XP_048784680
LinkDB
All DBs
Position
28:301044..307857
Genome browser
AA seq
914 aa
AA seq
DB search
MQRRITSFFAPPRAADGAVPAHAQKLELSPPEETPQERQDPDGSTDPTSPGNSSAPVPPM
SPRAPCCPPSPQQPGDRDGDSDRDRDSAPPASKRCRQSPSNQDKEPPRPHKAPSSNSCIP
VEPSQYDPSRSGYHPVQDACWGHGHSVPYLAVARTFERIEEASSRLKIIEILTNFLRSVV
ALSPSELLPCLLLCLNRPGAASEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLG
LVAESSRCTQRTVVPPAPLSASGVLGKLREMAAMSGNASASKKIDIIKGLFVACRHSEAR
YLVRSLSGKLRIGLAEQSVLTALAHAVALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQS
RILKQTFCELPDYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEE
AAFTCEYKYDGERTQIHVLDSGAVFIYSRNQENTTAKYPDLVERIPKVLKPGVRSCILDA
EAVAWDKVTKQLQPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRR
LLRQSFEEVEGEFLFATSMDTHSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSH
KWLKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGF
TEENLEKHYNFLKEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAVG
LVDEDKGISLRFPRFLRVRGDKKPEEATSSTWLSSTRSSSRSRTSSRQRKGTRSFIDITL
QGQGQCCPGTCPTSDIPMCSPVAWGPQDIAILHPFSPLTPHLFSPYSLLSPGHYCHLPTL
VYPCLVSRVPMRPPVAWRLQDVITLHPLYFPTPYPVSLLPHPWSSPCVHSPINHLPIAPA
SLDLEWSCGHAMGL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggcggatcacgtctttcttcgcccctcccagggctgcagatggcgccgtccca
gcacatgcgcagaagttggagctgagcccccccgaagagaccccccaggaacgtcaggac
cccgatgggagcacggatcccacatcccctggcaacagctctgcccctgtaccccccatg
tcccctcgtgccccctgctgtcctccatccccacagcagccaggggacagggatggagac
agtgatagggatagggacagtgccccccctgcatccaagcgctgccgtcagtcacccagc
aaccaggacaaggaacctccccgtccccacaaagctccatcctccaacagctgtatacca
gtggagccatcccagtatgaccccagcaggagtgggtaccacccagtgcaggatgcgtgc
tgggggcatggacacagtgtcccctacctggcggtggctcgcacctttgagcgcatcgag
gaggcctcatcccggctgaagatcattgaaatcctcaccaacttcctgcgctctgtggtg
gccctgtccccctccgagctgctcccctgccttcttttgtgcctcaaccgtcccggagcc
gcctctgaggggctggagctgggcatcggcgagaccctgctgacccgtgccctcgctcag
gccactggccgccagctggctcagattcgcagtgaagcacaggacaaaggggatttgggg
ttggtggccgaaagcagccgctgcacccaacgcacggtggtgccaccagccccgctgagc
gccagcggtgtccttggcaagctgcgggagatggccgccatgtcaggcaatgcatctgct
agcaagaagattgacatcatcaaggggctgtttgttgcctgccggcactcggaggcacga
tacctcgtccggtcgctcagtgggaagctacgcattgggctggccgagcagtcggtgctc
actgcgctggcacacgccgttgctctcaccccaccagggcaagagtggccgctggctgtg
gtggatgctgggcagagcatggcacctgatgcacgcagaacttggttggaggagcagagc
cgcatcctcaagcagactttctgtgaactgccagactatgctgccattgtcccagtgctg
ctggagcacggcctggagcagctccccaagcactgcggcatcactccaggtgttcccttg
aagcccatgctggcccaacctgctcgctgtgtcagtgagctgctgaagcgctttgaggag
gctgcattcacctgcgagtacaaatatgatggagaacgaacccagatccatgtcctggat
agtggggccgtcttcatctacagccgcaaccaggagaacacaacagccaaataccctgac
ctcgttgagcgcatccccaaggtgctgaagcccggtgtgcgctcatgcatcctggatgca
gaagcagtggcttgggacaaggtcaccaagcagctgcagcccttccaggtgctgatgacg
aggaagaggaaggatgtggatgctgctgccattaaggtgcaagtgtgtgtctatgccttt
gatctgctatacctcaatggggagcctctggtgcgggagcccttggccacgcgacgtcgg
ttgttgcgacagtcattcgaggaagtggagggcgaattcctctttgccacctcgatggac
acccacagtgctgatgaggtctctgatttcctggacaaagccatcaaggcttcttgtgag
ggcctcatggtgaagacactggaggtggaggccacctacgagattgctaagcggtcccac
aagtggctgaagctgaagaaggactacctcgatggcctcggggacacgctggacctcgtt
gtcataggtgcctacctgggcaagggcaagcgtgcaggcatctatgggggcttcctcctg
gcctgctatgatgaggagagtgaagagtaccaaagcatctgcaagataggcactggtttc
actgaggagaacttggagaaacactacaacttcctcaaggaacacgtcttgactcaaccg
cgtccctattaccgctgggacaacgcagtggcccctgaccgttggctggcggccgtgcag
gtctgggaggtgaaatgtggggacctgtccatttcccctgtctacagggcagctgtgggg
ctggtggatgaggacaagggcatctcgctgcgcttcccgcggttcctgcgtgtgcgcggg
gacaagaaacccgaagaggccaccagcagcacgtggctgagctctacaagaagcagcagc
agatccagaaccagcagcaggcagagaaaggggacgaggagttttattgacatcacccta
cagggacaggggcaatgctgcccggggacttgtcctacatcagacatccccatgtgttcc
cctgtggcctggggacctcaggacattgctatcctccatcccttcagtcccctcacccca
catctgttttccccgtatagcctgttgtccccaggccattattgccaccttccaaccctt
gtctacccctgccttgtatccagggtccccatgcgtccccctgtggcatggagacttcag
gatgtaataaccctccatccattgtatttccccaccccatatccagtgtcacttctgccc
catccctggagctccccatgtgtccactccccaataaaccatctgcccattgctccagct
tctttagacctggaatggagctgtggtcatgcaatgggactctag
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