Lagopus muta (rock ptarmigan): 125685743 Help Entry 125685743         CDS       T09141                                  Symbol COPA Name (RefSeq) coatomer subunit alpha   KO K05236   coatomer subunit alpha Organism lmut  Lagopus muta (rock ptarmigan) Brite KEGG Orthology (KO) [BR:lmut00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lmut04131]     125685743 (COPA)   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:lmut04147]     125685743 (COPA) Membrane trafficking [BR:lmut04131]  Endoplasmic reticulum (ER) - Golgi transport   Retrieval pathways    Coat protein complex I (COP-I)     125685743 (COPA) Exosome [BR:lmut04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    125685743 (COPA)   Exosomal proteins of bladder cancer cells    125685743 (COPA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Motif Other DBs NCBI-GeneID:  125685743 NCBI-ProteinID:  XP_048785040 LinkDB All DBs Position 29:complement(533961..552469) Genome browser AA seq 1224 aa AA seqDB search MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAENLKETFDP EKETIPDIDPNAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDNV GTEGWGEDAELQLDEDGFVDAGEGFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPAGPAG GAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFL QTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAVGLKLNDLIQRLQLCYQLTTAG KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEH QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ TRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFQGQI CRVTTVTEIGKDVIGLRISPLQFR NT seq 3675 nt NT seq  +upstreamnt  +downstreamnt atgttgactaaattcgagaccaaatcggctcgggtgaaagggctcagcttccaccccaag aggccttggatcctcaccagcctacataatggcgtcatccagctgtgggactatcgcatg tgcacccttatcgacaagttcgacgagcacgatggacctgttcgaggtattgatttccac aagcagcagcctctgtttgtttctggaggtgatgactataaaataaaggtctggaactac aaactgcgccgctgtcttttcactctgcttgggcatttggactacatccgcaccaccttc ttccatcacgaatatccgtggatcttgagtgcttccgatgatcagaccattcgggtttgg aactggcagtccagaacttgtgtctgtgtgctgacaggacacaaccactatgtgatgtgt gcccagtttcacccctctgaggacctggtagtgtcagccagcttggatcagaccgtacgc gtgtgggatatttctggcttaagaaagaagaacctgtcccctggagctgtggagtcagat gtcagaggaataactggggtggatttgtttgggacaacagatgcagttgtgaagcacgtt cttgagggccatgatcgtggagtgaactgggctgccttccatcccacaatgccactgatt gtgtcaggagctgatgatcgacaagtgaagatctggaggatgaatgaatcgaaggcctgg gaggttgacacttgccgggggcattacaacaatgtctcctgtgctgtctttcaccctcgg caggagctgatcctcagcaattcagaggacaaaagcatccgtgtgtgggatatgtcaaaa cgcacgggtgtccagaccttccgccgtgatcacgatcgcttttgggtattggctgctcat cccaatctcaacctctttgctgcaggccatgatggtggcatgattgtgtttaaactggag cgtgagcgtcctgcttatgcagtgcatgggaatatgctgtattatgtgaaggaccgattc ctccgccagcttgactttaacagctcaaaagatgttgctgtcatgcagctgcgcagtggt tccaagttccctgtgttcaacatgtcatacaacccagctgagaatgctgtccttctctgc acaagagcaagcaacttggagaatagcacttatgacctatacaccattcccaaggatgca gactcccagaatccagatgcccctgaagggaagcgctcctcggggctaacagctgtgtgg gtagctcgtaaccgctttgcagtcctggatcgcatgcattcgatcctcatcaaaaacttg aagaatgagatcacaaagaaggttcaggtgccgaactgtgatgagattttctatgctggc acagggaacctgttactgagagatgcagactccatcaccctctttgacgtgcagcagaag cggactctggcctcagtgaagatctctaaggtgaaatatgtcatctggtcagctgacatg tcccacgtagctctgctggctaagcatgccatcatgatctgcaacagaaagctggaatca ctgtgcaacatccatgaaaacatccgtgttaagagcggtgcctgggatgaaagtggtgtt ttcatctataccaccagcaaccacatcaaatacgctgtcaccacaggggaccatggcatc atccgcaccctggacctgcctatctatgttactcgtgtgaaggggaacaatgtgtactgc ctggacagagaatgtcgccccagggtcctcaccattgatcccacagagttcaaattcaag ctggcattgatcaacagaaagtatgatgaggtgttgcacatggtgaggaatgctaagctt gtgggtcagtccatcattgcctacctgcagaaaaagggttatcctgaggtggccctgcac tttgtcaaggatgagaaaacccgtttcagtctggcactggaatgtggcaacattgagatt gctctggaagcagccaaggctctggatgacaagaattgctgggagaaactgggagaagtg gcactactgcagggaaatcaccagattgtggagatgtgctaccagcgcaccaagaacttt gataggctctccttcctctatcttattactggcaacctggagaagcttcggaagatgatg aagattgctgagatccgtaaagatatgagtggccactaccagaatgccttgtatctagga gatgtggcagagagagtgaggattctgaagaactgtggacaaaagtccctggcctatctc acagctgcaactcatggtctggatgaggaagctgaaaacctgaaggaaacgtttgatcct gaaaaggaaacgattccagacattgatcccaatgcaaaactactacagcctcctgctcct gtcatgcctctggatactaactggccattgctgactgtctccaaggggttctttgaagga acaattgctagcaaaggcaaagggggtgccttggctgctgacatagatattgacaacgtt ggtactgaaggctggggagaagatgcagagttacagctcgatgaagatggctttgtggat gctggagaaggctttggagaggaaggtctgggtaaaggacaggaagaaggaggtggatgg gaagttgaagaagacttggatcttcctcctgaactggatgttcctgctggtccagcagga ggagcagaagatggcttctttgtgccacccaccaagggcaccagcccagcacaggtgtgg tgtaacaattcacagcttcctgttgaccacattctggcaggttcctttgagacagcaatg agactcctccatgaccaggtgggagtaacaaactttggaccctacaagcagctgttcctg cagacctatgcccgtggtcgtacaacctaccaagctctgccatgtctccctaccatgtat ggctacccacatcgtaactggaaagaagctggcttgaagaatgccctcccagctgttggg ctgaagctcaatgacctgattcaacgcttacagctgtgttaccagctcacaacagctggc aagtttgaggaggctgtggagaagttccgctccatcttgctgagcgtgcccttgctggtg gtggacaataagcaagagattgctgaggcccagcagctgatagccatttgtcgggagtat atcgtagggctctcaatggagatcgagcggaagaagctgcccaaggagaccttggagcac cagaagcgaatctgtgagatggctgcctatttcacccactccaacctgcagcctgtccac atgatcttggtgctgcgcactgctctcaacctcttcttcaaactcaaaaacttcaagaca gctgctacttttgctcgtcggctgctggagctgggtccaaagcctgaggtggcccagcag acccgcaagatcttgtcagcatgtgagaagaatcccaccgacacctaccagctcaactat gacatgcacaacccctttgacatctgtgctgcctcttaccgacccatctatcgtggcaag cctgtggagaagtgtccacttagtggagcttgctactgccctgagtttcaggggcagatc tgccgtgtcacaacagtgacagagatcggcaaagatgtcattgggctgcggatcagcccc ctccagttccgctga

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