Lagopus muta (rock ptarmigan): 125686382
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Entry
125686382 CDS
T09141
Symbol
SAMD4B
Name
(RefSeq) LOW QUALITY PROTEIN: protein Smaug homolog 2
KO
K27396
protein Smaug
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125686382 (SAMD4B)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125686382 (SAMD4B)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SAM_1
PHAT
SAM_2
SMG1
SAM_3
Motif
Other DBs
NCBI-GeneID:
125686382
NCBI-ProteinID:
XP_048786245
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All DBs
Position
37:complement(54714..60238)
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AA seq
668 aa
AA seq
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MMFRDQVGIVAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCADIHLLEA
EANSAAAISQWPQEPAEAAVALLLAHLPLLQPGNAAAKAEYMKRLQKVLAYAIESNRCVE
ESRQLLSYALIHPATTLDDRSALALWLGHLEERLAGTPAATTSPSSPXCCTPPHPAVPPH
DWPEHGPPEIGPPWPEAAPRENGHPPFHPPSSGNGPGGHSGVGPGPNSRLSAALPCQLHP
SPLKRSLSLVPGSPQGGSGEWPGGGRGARTPSHPLRRPRPLSPQSSVASSGSEQTEEPTG
GRNTFQEDGSGMKDVPSWLKSLRLHKYAALFSQMTYEEMMTLTEHHLESQNVTKGXRHKI
ALSIQKLRERQSVLKALEKDILEGGNLWTALQELQQIMVTPIKAFRPPPAPPANGAHDGA
PPGAADAFAPHPAADTEAPAAPVPDGDIPGQFTRVMGKVCTQLLVSRPDEENITSYLQLL
EKCLSHEAFTETQKKRLLSWKQQVLKLLRAFPKKVPLDGQGYRPPKGWGFGSNSLPIAGS
VGGAGGRRGQRPFALPPRALPPARMGLLGPAGGGPAPRPPLGAAPLGAQGRQSLWFSSGG
AGGAPGSRSVVQRTHSLPVHTSPQALLAFPQECPVPGTDLEINPTLESLCLSMTEHALGD
GTDKTSTI
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgggaccaggtggggatcgtggccgggtggttcaaaggttggaacgaatgt
gagcaaaccgtggcgttgctttcgctgctgaagcgcgtcacccgcacccaggcacgcttc
ctgcagctctgcctcgagcactctttggccgactgtgctgacatccacctcctcgaggct
gaggccaatagtgccgctgccatcagtcagtggccacaggagccagcagaggcagcagtg
gccctgctgctggcccacctacccctgttgcagccgggcaatgctgctgccaaggctgag
tacatgaagcggctgcagaaggtgctggcctacgccatcgagagcaaccgatgcgtggag
gagagccgacagctcctttcctatgccctcatccaccctgccaccaccctggatgaccgc
agtgcgctggccttgtggctgggccacctggaggaacgtttggccggaacccccgcagcc
accacgtccccctcctcgccctgatgctgcacccccccccaccccgccgtgcccccccac
gactggcctgagcacggaccccctgagattgggcccccctggcctgaagcagctccccgg
gaaaacggccaccccccttttcacccccccagcagtggcaatgggcctggggggcacagt
ggggtgggacctggacccaacagccgcctctccgcagcgctgccctgccagctgcacccc
agcccactgaagcgctccctgtcgctggtgcctggcagcccccaggggggcagcggtgaa
tggccagggggggggcgaggagccaggaccccctcgcacccccttcggcgaccacgcccc
ctctcaccccagagcagcgtggcctcctcgggcagtgagcagaccgaggagcccaccggt
ggccgcaacacctttcaggaggatggcagcggcatgaaagacgtcccctcctggctgaag
agtctgaggctccacaagtacgcagccctcttctcccagatgacgtacgaggagatgatg
acgctgacagaacaccacctggagtcgcagaacgtcaccaagggcnngcggcacaagatt
gcactcagcatccagaagctgcgggagcggcagagcgttctcaaagcactggagaaggac
atcttagaaggtgggaacctgtggacggcattgcaggagctgcagcagatcatggtgacg
cccatcaaggccttcaggcccccacctgccccccctgctaatggagcacatgacggggct
cccccaggggctgccgatgcctttgccccccacccagctgccgacactgaggcccctgca
gcccctgtccctgatggagacatcccagggcagttcactcgtgtcatgggcaaagtctgc
acccagctgctggtgtcacggccggatgaggagaacatcacgagttacctccagctcctt
gagaagtgcctgagccacgaggcgttcacggagacgcagaagaagaggctcttgtcttgg
aagcagcaggtcctgaagctgctccgcgccttccccaagaaggtgccacttgatggccag
ggctaccggcctcccaaaggctggggctttggctccaactcgctccccatagctggctct
gtgggaggggcgggggggcggcgggggcagcgcccctttgcgttgcccccccgtgcgctg
ccccccgcccgcatggggctgctgggccctgctggggggggtcctgccccacggcctccc
ctcggtgccgccccccttggagctcaaggacgccagagcctgtggttcagcagcgggggg
gctggtggtgccccggggagccgcagcgtggtgcagcgcacccactcgctgcccgtccac
acctcaccccaggccctgcttgccttcccccaggaatgtcccgtccctggcacggactta
gagatcaaccccacgctggagtcactgtgcctgagcatgacggagcacgcgctgggggat
ggcacagacaagacctcaaccatctga
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