Lagopus muta (rock ptarmigan): 125686418
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Entry
125686418 CDS
T09141
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04137
Mitophagy - animal
lmut04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125686418
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125686418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125686418
03009 Ribosome biogenesis [BR:
lmut03009
]
125686418
04131 Membrane trafficking [BR:
lmut04131
]
125686418
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmut04147
]
125686418
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125686418
Ribosome biogenesis [BR:
lmut03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125686418
Membrane trafficking [BR:
lmut04131
]
SNARE
SNARE associated proteins
Others
125686418
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125686418
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125686418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
CDC48_2
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
Viral_helicase1
Sigma54_activat
NACHT
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
125686418
NCBI-ProteinID:
XP_048786342
LinkDB
All DBs
Position
W:1368950..1429524
Genome browser
AA seq
809 aa
AA seq
DB search
MASGSDSKADDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQSCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKDFIGDIFLVRGGMRAVEFKVVETDPSPYCIVA
PDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP
PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA
PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL
RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVGNETHGHVGADLAALCSE
AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE
DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAA
DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL
KANLRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNP
SAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGN
QGGAGPSQGTGGGSGGNVYSEDNDDDLYG
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggatctgattctaaagcagatgacttatcaactgctattctgaagcagaag
aacagacctaatcggttaattgttgatgaagccatcaatgaagacaacagtgttgtgtca
ctgtcccaggcaaaaatggatgaattgcagctgttcagaggagacactgttctgttaaaa
ggaaagaagaggagagaagcagtctgcattgttctgtcagatgatacctgctcagatgag
aagattcgcatgaatagggttgttcgcaacaacctgagagtgcgactgggtgatgtgatc
agcatccagtcctgccctgatgtgaaatatggcaaacgtatccatgtgctgccaattgat
gacacagtagaagggatcacggggaatctgtttgaggtctatctcaagccatacttcctg
gaagcatacagacccatcagaaaagattttataggtgacatcttcttggtgcgaggaggg
atgcgtgcagtggagttcaaagtggtggagacagatccaagtccttactgcatagtggct
ccagacacagtaatccattgtgaaggagagcccatcaaacgagaggatgaagaagagtca
ttaaatgaggtgggctatgatgacattggtggctgccgaaagcagctggctcagatcaaa
gagatggtagaacttcctctccgacaccctgcgctcttcaaggccataggggtgaagcct
ccacgtggaatcctgttgtatggtccccctggcactggaaaaactttgattgcccgagca
gtggccaatgaaactggggcttttttcttcctgattaatggtcctgagatcatgagcaag
ctggctggtgagtctgagagcaacctgaggaaagcctttgaagaagctgagaagaatgct
cctgccatcatcttcattgatgaactggatgccattgctccaaagagagagaagacacat
ggagaggtggaacgtcgcatagtatctcagctgttgactcttatggatggactgaaacag
agggcacatgtgattgttatggcagctaccaacagacctaacagcattgacccagcgctc
aggcggtttggtcgttttgacagagaggtagatattggtatcccagatgcaactgggcgc
ctggaaatcctgcagatccacacaaaaaatatgaaactggctgatgatgtggatctggaa
caggtgggaaacgagacccatggacacgttggtgctgacttggctgctctttgctcagaa
gctgctcttcaggctatcagaaagaagatggatctcatagatctagaagatgaaaccatt
gatgctgaagtgatgaactccctggctgtgaccatggatgacttcaggtgggctctgagc
cagagcaacccttctgctcttcgagagactgtggtggaggtgccacaagttacctgggaa
gatattggtggcctagaagatgtaaagagagaactccaggagcttgtacagtatcctgtg
gagcacccagacaagttcctaaaatttggtatgaccccatcaaaaggggttctgttttat
gggccacctggttgtggtaagacacttctggccaaagccattgccaatgaatgccaggca
aacttcatttccatcaaggggccagaattgcttaccatgtggtttggagaatctgaagcc
aatgtgcgtgagatctttgacaaggcccgccaagcagccccttgtgtactcttctttgat
gagctggactccattgcaaaggctcgaggtgggaatattggagatggtggtggtgctgca
gatcgcgtcatcaaccagatcctgacagagatggatggcatgtctaccaagaagaacgtc
ttcatcatcggtgccaccaacaggccagacatcattgacccagctatcttgcgtcctggc
cgcctggatcaactcatttacatccccctgcctgatgagaagtcccgagttgctattctt
aaggccaacttgaggaaatcaccagttgcgaaggatgttgacctggatttcctagctaag
atgaccaatggcttttcgggggctgatctgacagaaatttgccagcgtgcctgcaaactg
gccatccgtgagtccattgagagtgagatcaggcgagaacgtgagaggcagaccaaccct
tctgctatggaagtggaggaagatgatccagttcctgagatacgcagggatcactttgag
gaggccatgcgctttgctcgccgctctgtcagcgacaacgacatcaggaaatatgagatg
tttgcacagactctacagcagagccgcggctttggcagcttcaggttcccatcaggtaac
cagggaggcgctgggccaagccaaggcacaggaggtggcagcgggggcaacgtttacagt
gaagacaatgatgatgatctttacggttaa
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