Lagopus muta (rock ptarmigan): 125686917
Help
Entry
125686917 CDS
T09141
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125686917 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125686917 (SMARCA2)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125686917 (SMARCA2)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125686917 (SMARCA2)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
125686917 (SMARCA2)
Chromatin remodeling factors
BAF complex
125686917 (SMARCA2)
PBAF complex
125686917 (SMARCA2)
GBAF(ncBAF) complex
125686917 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
125686917
NCBI-ProteinID:
XP_048787454
LinkDB
All DBs
Position
Z:26826820..26931066
Genome browser
AA seq
1568 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHQMPAM
GPTDYPQEGMHQMHKTIDGLHEKGMVEDVHCGSMKTMRPPHPGMGPPQSPMDQHSQGYMS
PHPSPLGAPEHVSSPMSGGGPTPPQMTPSQPGPIIPGDPQVMSQPNRGPSPFSPVQLHQL
RAQILAYKMLARGQPLPENLQLAVQGKRTLPGIQQQQPPSAFNRQSGIGMHAMSGAAAGP
GPAAGIPGHTASITPKTWNEGQTPDMSVSSAPQKLPAPSLSGRPSPAPTAAQPAAAMPGP
SVPQPPPGQPSPIVQLQQKQNRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLP
GSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLRE
ARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHA
NTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVW
EHKQAQAAKEKKKRRRRKKKAEENAEGMASGLGPDGEPIDESSQMSDLPVKVTHTETGKV
LLGPEAPKASQLDAWLEMNPGYEVAPRSDSEDESGSEYEEEDDEEESSRLEADEKILLDP
NSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAITERVEKQSSLLINGTL
KHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLST
LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIR
WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFK
SCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEY
VIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQH
IEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMED
YFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVIIF
DSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMF
DQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRRED
ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQ
WLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDSGKEDGEKAKKRRGRPPAEKLSPNPPKLT
KQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR
SLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNDDEDD
DDEEESESESKSVKVKIKLTKKDEKSREKGKGKKRQSRAKAKPVVSDDDSDEDQDENDQS
EASGSDDE
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggcgccatgcctcatcctggtccttcccctggaccagga
ccttcacctggaccgattctaggacctagcccaggaccagggccatctcctggctcagtt
cacagcatgatggggccaagtccaggtccacccagtgtcccgcatcaaatgccagcaatg
gggcccactgattatccacaggaaggcatgcaccaaatgcataagaccattgatggctta
catgagaaaggaatggttgaagatgttcattgtggctccatgaagactatgcgacctcct
caccctgggatgggcccacctcagagtccaatggaccagcatagccaaggttatatgtct
ccacacccgtctccactaggagcaccagagcatgtatccagtccgatgtccggaggaggt
cctactccaccccagatgactcccagccagccaggacctattatacctggggacccgcaa
gttatgagtcaacccaacagaggtccctcccctttcagccctgtacagctgcaccaactt
cgggctcagattctagcatacaaaatgttagctagaggtcagcctttaccagaaaacctc
cagcttgctgttcagggaaagcggacccttcctggcattcaacaacagcagcctcccagt
gccttcaacagacagtctggtattgggatgcatgcaatgagtggtgctgcagctggacca
gggcctgctgcaggaatacctggacatacagcttccattactcctaaaacgtggaatgaa
ggccaaactccagatatgagtgtctccagtgcaccgcagaaacttcctgcaccatctctg
agtgggaggccttctcctgcccctactgctgcccagcctgctgctgctatgcctgggcct
tctgtaccacaaccaccacctggacagccttcccccattgttcagctgcagcaaaagcag
aatcgcatcagccctattcaaaagccacaaggattagaccctgttgaaattcttcaagaa
cgggaatataggcttcaagcacgaattgctcacagaatccaggaactggaaaatttgcca
ggttctctgccccctgatctgcgaaccaaagcgacggtggagttgaaggcacttaggtta
ctgaatttccagcgccagttgagacaagaggtagtagcctgcatgcgtcgtgatacaacg
ctggagacggcactgaactccaaagcctacaaacgaagcaagcgccagactttgagggag
gcccgtatgacggaaaagcttgagaaacagcagaagatagaacaggagaggaagcgtaga
cagaagcatcaggaatacctgaatagcatattgcaacatgctaaagacttcaaggagtac
catcggtcagtggctggcaaaattcagaaactttctaaagctgtggcaacttggcatgcc
aacactgaacgtgaacagaagaaagaaactgagagaattgagaaagaaagaatgaggaga
ctaatggctgaagatgaagaaggctaccgtaagctgattgaccaaaagaaagatagacgc
ctggcctacctattgcagcagacagatgagtatgttgctaacttgactaatctggtatgg
gaacataaacaggcacaagcagccaaagagaagaagaagaggagaagaagaaagaagaag
gctgaagaaaatgcagaaggcatggcatctggtcttggtcctgatggagagcccatagac
gagagcagccagatgagtgaccttccagtcaaagtgactcacactgaaacaggcaaagtt
cttcttggtccagaggcaccaaaagcaagtcagctagatgcttggctggaaatgaaccct
ggctatgaagttgctcccaggtcagacagtgaagatgaaagtggttctgaatatgaggag
gaggatgatgaggaggaatcaagcaggttagaggcagatgagaagatactcctggatcct
aacagtgaagaagtttctgagaaagatgctaaacaaatcattgagactgccaaacaagat
gtggatgatgaatacagtatgcaatatagtgctagagggtctcagtcctactacacagtt
gcacatgctatcacagaaagggtggaaaagcagtcttctcttctaattaatggcacacta
aaacattatcagcttcagggactggaatggatggtttcactctataacaacaatctgaat
gggattttggctgatgaaatgggtctgggaaagacaatacagactattgcacttatcact
tacttgatggagcacaaaaggctcaatggcccctatctcatcattgttcctctttcgaca
ttatccaactggacatacgaatttgacaagtgggctccttctgtggtgaagatatcttac
aagggtacacctgcaatgcgccgctcacttgttcctcagcttcgaagtggaaaatttaat
gttcttttgactacatatgagtacataataaaggacaaacatattcttgctaagattcga
tggaaatacatgatagtagatgaaggtcatcgaatgaagaatcatcactgcaaactgact
caggtcttgaacactcactatgtggcccctagacgaatactactgactgggacaccattg
cagaataaattgcctgaactgtgggctcttctcaattttcttcttccaaccattttcaag
agctgtagcacctttgaacagtggttcaatgctccatttgccatgacaggagaaagggtg
gacttaaatgaagaagaaactattctgatcatccgtcgtctccacaaagtactccgaccc
ttcttgctgagaagactgaagaaggaagtggagtctcaactgccagaaaaggtggaatat
gtgatcaaatgtgatatgtctgctctccagaagatcctataccgacacatgcaagccaag
ggaatccttcttacagatggttctgagaaagacaagaagggaaaaggtggcgcaaaaact
cttatgaacaccatcatgcaactgagaaaaatatgcaatcatccatacatgtttcagcac
attgaggaatcctttgctgaacatttgggctactcaaatggtgtcatcaacggagctgaa
ctttatcgggcctcagggaagtttgagctgcttgatcgcatcctaccaaagttacgagct
acaaaccatcgtgtgcttcttttctgtcaaatgacatcactcatgaccattatggaagac
tactttgcctttcgaaatttcctctacttgcgtcttgatggcacaacaaaatcagaagat
agagctgctctcttgaagaagttcaacgaacctgggtcacaatacttcatcttcttgctg
agtacaagggctggagggctaggcttgaatctccaggctgctgatactgttataatcttt
gatagtgactggaatcctcatcaggacttgcaggcacaagatagagctcaccgaattggt
cagcagaacgaagttcgagttttgcgactgtgcactgtgaacagtgtggaagagaagatt
cttgctgctgcaaagtataagttgaatgtagatcaaaaagttattcaggctggaatgttt
gatcagaagtcttcaagtcatgaaaggagagcttttctacaggctatactggagcatgag
gaagaaaatgaggaggaagatgaagttcctgatgatgagactctgaatcagatgatcgcc
cgacgtgaagaggaatttgatctctttatgcgtatggacatggaccgtcgcagagaagat
gccagaaaccccaagcgcaagccccgcttgatggaggaggatgaattgccatcctggatt
attaaggacgatgctgaagttgaaaggctcacgtgtgaagaagaggaggaaaagatattt
ggaagaggatcccgtcagcgcagggatgtggactacagtgatgctctcacggagaagcag
tggctgcgggcgattgaagacggcaatttggaagaaatggaagaggaagttcggcttaaa
aagcggaagagacgaagaaatgtggataaagactctgggaaggaggatggagagaaagca
aagaaaagaagaggcagacctcctgcagagaaattatcacctaacccacccaaactgaca
aagcaaatgaatgccatcattgatacagtgataaactacaaagacagctctggacggcag
ctaagtgaagtcttcattcagctcccatcgagaaaagaactaccagaatattatgaattg
attaggaaaccagtggatttcaaaaaaattaaggaaaggattcgcaaccataaatatcgg
agtcttggggatttggagaaggatgtcatgttgctgtgtcataatgctcagacattcaat
ctggagggatcacagatctatgaggattccattgttcttcagtccgtgttcaaaagtgca
cgacagaagattgccaaagaagaagaaagtgaggatgaaagcaatgatgatgaagatgat
gatgatgaagaggagtcagagtcagaatcaaaatctgtgaaagtcaaaatcaagctgact
aaaaaggatgaaaaaagtcgggagaaaggaaagggcaagaagaggcaaagccgagcaaaa
gccaaacctgttgtgagtgatgatgatagtgatgaggatcaagatgaaaatgaccagtcg
gaagcaagcggaagtgatgatgagtga
DBGET
integrated database retrieval system
