Lagopus muta (rock ptarmigan): 125686979
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Entry
125686979 CDS
T09141
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125686979 (FOCAD)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125686979 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
125686979
NCBI-ProteinID:
XP_048787631
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All DBs
Position
Z:34575477..34667661
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AA seq
1800 aa
AA seq
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MSDDIKKRFEFPNAVIQSQAVGHLIAAVLKENASSEKIKQASHQTPALNLLWEKCCSENV
ALRTACSEGLVALVAENHAELSYVLHGAVNLIPSARNVHGLVKTIWKLLQIQATQLGRDG
DEAVQNLYGIRNNPHPLITVLENRPDCWPVLLQQITVFFHQCSERAQSSCVAIMAPFLRY
LYCEPSQLREYAELRMGLLRILLQPRGPKHKEAPCVLEHRILQLLCDLIPHLQVKDLPQV
TEALFFLQELFLSLLRFPVFWKVQLSQLCLQLISFCEVCLNVTGECSSLISIIEDNFELL
QEVFPVEQCVIGLALLLLQTPESQQKSILSLAYKLLSSSENISTKALVLVMPLLQILSSS
SVGDCLQEGDSGTTRQQLATDLLEILKKEDVKNQKELMSCELLFPITSSYCSLCTTWKIL
EVMKEKSAVTDWLSSVRSLLPVTTQVPTHVFLLLAYLLIQEKGDCLRDVLQTTTEVAKAD
CSQVPSLIPVLIFILGRPLEPALYGDILYTLPSLGVHKVCVAQILRSIHMLGSTPKLRAV
ALRLMTSLWERQDRIYPELQKFLATSDVPSLSVDKDAQWEKVIAKAACIRDICKQRPYQH
GADMLAAISQVLNECTKPDQASPAAIVLQGLQALCEAEVVCINSTWNALSPKLSCDTRPL
ILKALNELFALVPSLTVNTNEYEKFKAQVLSFLWKNTQHKDAIVAVSAYKSLSSFGSDEH
TILHLPEQARMEINSMEETDVNEDEEEREVDLFVPGSSYIKLLSLTPDPVLGAFEEFATS
LVKQEMTNMPRGVYHTALRGGATRTDQGKTVAGVPNFLLKMYERNKQPGMTPGLAAGMLL
CYDLPVHMGRDGKPINRFLASRGRNFQQMLVALIHEVNIQPSEWHRSILLPQSWLGFMSR
TYSAVLQGRQAELEMQLKHGKEDPEDVQYKQFTAWLWVRDMLTDAIKGASKESPVVKGNS
ILALTGLAAAVAKYESSLSSDTEGMPETVPDFLPMQQWIYMVIETLFSIVNSRYRPKGQV
FPWFYQKSYSGENTASAIARSCAATALSLLVPVIVVSCKEKVEEVLNMLTTRLPGKPNAD
ESQAVQIHMGLALGMFISRLCEEKVSELPGQQMNLVLMKSLDALEDCCFDSSLEYNTGCI
LGVGLVLSFLSHSSQTESRVHVSASLRKLCAYLESSEDQSRWVQEVLAYSVACSCVSAFS
VGIIEAAEAEEAMNKLRTLVEKNLQTSGFALALGTVVHGLSVCGHGKAEDLSNKLMPAWI
KVVIAEGSPTMQRLAAVNGLVALVGSEGGVIQLKSESIQTSQFQSKLNEVIRTLTQVISF
SGQIGLQTNAAGLLGHLHMSCLSSTQSRTSVPPDFSYLPESSFIRAAIDFAIESGKKGPE
SVPAQLVKVALAPIAVVGGSHQYPPVNWASVLSPLMRLNFGDEIKYLCLELATTQAQSSQ
NAAMLLGMWVAPPLVYSLSTKTQKYLFTSLSLWMKHVAEDKLQAFTEVFLIQQFEVNRTK
NPEICQCVLQGLMQAMKIPNPAQYCWGFLCQATEKIFELLPNEIQRSELEMYVSVAKCIS
EMVDAEIDRIVQLSKNNMEKAIFTKLYLISQGRLPLKNLSVVIDTWTGYYQKESTVWMFL
HSFYHSRIVSHENTGVMKRMDWLLDLMGYIGNLAYKSTPVQNVHLKEVIDFLLWLFAGAV
VAWADHSAPLLLGLSADWSPWKHQTVLAELFEDRVGKHPADKLAMQETLTLLPSSISLLL
AKEPWKEQAQRFIDWLINMLESPKEALSKSSTNLLKVTLLALRSLAEFKKKAVWTKAYGW
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgacatcaagaagcggtttgaattccctaacgcagttattcaatcacaggca
gtgggccatctgattgctgcagtactgaaagaaaatgcttcttcagagaagatcaagcag
gcctctcaccagactcctgctctgaacttactctgggagaagtgctgcagtgagaatgtt
gccttgagaacagcttgctctgagggtttggtggcacttgttgcagagaaccatgccgag
ctcagctatgttcttcatggagctgtcaacctgattccttcagcaaggaatgtgcatggc
ttagtaaaaactatttggaaactactgcaaattcaagctacacagctgggaagagatgga
gatgaggctgttcagaatttgtatggaatcaggaacaatcctcatcctttaatcactgtc
cttgaaaatagacctgattgctggccagttctacttcagcagataacagtatttttccat
cagtgttcggagagggcacagagttcatgtgttgctataatggctccatttctaagatac
ctgtactgtgaaccatctcagttacgggaatatgctgaactgcgaatgggcttgcttagg
attttacttcagccacgtggtccaaagcataaagaagcaccctgtgttctggagcatcgt
attcttcagctcctgtgtgatttgattccacatcttcaggttaaagacttgccacaagtt
acagaagccttgttttttcttcaagagctattcctcagcttgttgcgctttcctgtgttt
tggaaagttcagttatcccaattatgtctgcaactgataagcttctgtgaagtgtgttta
aatgtaacaggagaatgttcatctctgatctccataatagaggacaactttgagctctta
caagaggtgtttccagtggaacagtgtgtaattggactagcacttctgctgctgcaaacg
ccagaaagtcaacagaagtctatcttgagtctagcctacaagctcctatcctcttcagaa
aacatttcaaccaaagcccttgttttggtgatgcctctgctgcaaatcttatcttcttcg
tcagttggagactgcttacaggagggtgattctggaactactaggcagcaactggctaca
gatcttttggaaatattaaagaaggaagatgtaaagaatcaaaaggaattgatgtcctgt
gaactcctattccccataaccagctcttattgttcattatgcactacttggaagatttta
gaggtcatgaaagaaaagtcagcagttactgactggttatcttcagtgaggtcattgctg
cctgttacaactcaagtccctacccatgtttttctgctacttgcttatctattgatccaa
gaaaagggagactgtcttcgtgatgtactgcagactactacagaggtagccaaagctgat
tgttctcaggtcccaagtcttattcctgttctgatatttatattgggaagacctttggag
cctgcactttacggggatatattgtatactttgccttcacttggtgtacacaaggtttgt
gtagctcagattttacgatccatacacatgctggggagcacaccaaagcttagagctgtt
gctctgcgtctgatgacatctttgtgggaaagacaggatcgaatttacccagaattacag
aagttcttggcaacatctgatgtaccctctttgtcagttgacaaggatgctcagtgggaa
aaagtgattgctaaagctgcctgtataagagatatttgtaaacagaggccataccagcat
ggagcagatatgttggctgcaatttcccaggtgttgaatgaatgcacaaaacctgatcaa
gcttcacctgctgctattgtcttacagggtcttcaggcactttgtgaggctgaggttgtt
tgtattaattctacatggaatgctctgtcaccaaagctgagttgtgatacaagacccctt
attttaaaagcactgaatgaactgtttgctcttgttccctcattaacagtgaatacaaat
gaatatgagaagttcaaagctcaagttctcagcttcctgtggaaaaacacgcaacacaag
gatgccattgtagctgtttcagcctacaaatcgctctcatcatttggctctgacgaacat
acaattcttcatcttcctgaacaggcacgaatggaaattaactcaatggaggagacagat
gtgaatgaagatgaggaagagagggaggtggatctttttgttccaggttcttcgtatatc
aagttgctgtctctaacaccggatcctgtattaggagcatttgaagaatttgcaacatct
ctagtcaaacaggagatgaccaacatgccccgaggtgtgtatcatactgctttgagagga
ggggccacacgcacagaccaggggaaaactgtggcaggtgttccaaatttcttgttgaaa
atgtatgagaggaacaaacaaccaggaatgacgccaggccttgcagctggcatgttgttg
tgttatgacctcccagtccatatgggcagagatggcaagcctattaatcgctttctggct
agcagaggacgcaatttccagcaaatgttggtagccctcattcacgaggttaacattcag
ccttctgaatggcaccgctctatactgctgccacagtcatggttgggatttatgagccga
acctacagtgcagtcctacagggaaggcaagcagagcttgagatgcagttaaaacatgga
aaagaggatcctgaagatgtgcaatacaagcagtttacagcatggctctgggttagagat
atgttgacagatgccatcaaaggtgcttcaaaggaaagcccagtggtgaaaggaaactct
attttagccctgactggtcttgcagctgctgtagccaaatatgaaagcagcctttcctca
gacactgaaggcatgcctgagactgtaccagattttcttcctatgcagcaatggatttat
atggttatagagactctctttagtatcgtgaatagccgttaccgccctaaaggacaagtt
ttcccgtggttctaccagaaatcctattctggtgaaaatactgctagtgctatagctcgt
tcctgtgcagccactgctttgtctcttctggtgccagttatcgttgtatcgtgcaaggag
aaggttgaggaagtcctgaacatgctgaccaccaggttacctgggaaaccaaatgctgat
gagtctcaagctgttcaaatccacatgggtcttgctttggggatgtttatctcacgtttg
tgcgaagaaaaagtcagtgagttacctggtcaacagatgaacttagttctaatgaagtcc
ctagatgcactagaagactgttgttttgactccagtctggagtacaacactggatgtatt
ttgggagtgggacttgttctttcatttctgagtcacagtagccaaacagaatcacgagta
cacgtttctgcttcactgcgaaaactatgtgcatacctggagagcagtgaggatcaaagc
agatgggtccaggaggtacttgcctattctgttgcctgttcctgtgtctctgctttcagt
gtaggaatcatagaagcagcagaggctgaagaagccatgaacaagctgcggaccttagtg
gaaaaaaatctgcagacatctggttttgctttagctcttggtacggttgttcacggtttg
tcagtttgtggccatggcaaagctgaagacttgagtaacaaactaatgccagcctggata
aaagttgtgattgcggaggggtctccaacaatgcagcgcctggctgctgtcaatgggctg
gttgcgctggtgggttctgaaggaggcgtgatacagctaaaatctgaaagcatccagacc
tcccagtttcaaagtaagctcaatgaagtcatcagaacccttacacaggtaatcagtttt
tcggggcagattggccttcagacaaatgcagcaggacttcttggacaccttcatatgtcc
tgtttatcttctacccaaagcaggacatctgttcctccagattttagctacttgcctgaa
agcagctttatcagggcagccattgactttgccattgaaagtggaaaaaaaggccctgaa
tctgttccagctcagctggtgaaagtagcattggcacccattgctgtagttggaggaagt
catcagtatccacctgtaaattgggcatctgttctttctcctttgatgaggttaaacttt
ggtgatgagataaaatatctctgccttgaactggctacgacgcaagcccaatcatctcaa
aatgctgcaatgcttttggggatgtgggtggcacctcctcttgtttacagtctcagtaca
aaaacacagaaataccttttcacgtccctgtccctgtggatgaaacatgttgcagaagac
aagctacaggcttttacagaagtgtttctgatacagcagtttgaagtgaaccgcacaaaa
aacccagaaatttgccagtgtgttttacagggactgatgcaggcaatgaaaattccaaac
cctgcccagtactgctggggctttttgtgccaggctaccgagaaaatatttgagcttcta
ccaaatgaaattcagagaagtgaactggagatgtatgtcagtgtagcaaaatgtatctca
gaaatggttgatgcagagattgatcgcattgtccagctctctaagaacaatatggagaag
gccatcttcaccaaactgtatttgatttctcaaggcagactgcctttgaagaacttgagt
gttgtgattgatacttggacaggctattaccagaaagagtctacagtatggatgttcttg
catagtttctatcactcccgtattgtgagccatgaaaacactggagtgatgaaaaggatg
gactggctgctggacttgatgggctacattggaaatttagcgtacaagtcaacacctgta
caaaatgttcatcttaaggaggttatagattttcttctgtggctgtttgcaggtgctgtg
gtggcctgggctgaccacagtgcaccattactgcttggcctcagtgccgactggtcacca
tggaagcaccaaacagtattagcagaattgtttgaggatcgtgttggcaagcatcccgct
gacaagcttgctatgcaggagacactcactcttcttcccagcagcatttcccttttgctg
gctaaagagccttggaaagaacaggcacaaaggtttattgactggcttatcaatatgttg
gaaagtcctaaagaagcattatcaaaatcttctacaaacctgctgaaagttacacttctg
gccttgagatctcttgcagagttcaagaagaaagcagtgtggactaaagcttatggctgg
tag
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integrated database retrieval system
