Lagopus muta (rock ptarmigan): 125686995
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Entry
125686995 CDS
T09141
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125686995
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125686995
Spliceosome [BR:
lmut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125686995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
R3H
YTH
DEAD
HA2_N
Ank_2
AAA_22
AAA_19
nSTAND3
Ank
ATPase
Ank_4
AAA_7
AAA_23
AAA_29
PhoH
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
125686995
NCBI-ProteinID:
XP_048787663
LinkDB
All DBs
Position
Z:complement(50594538..50632168)
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AA seq
1471 aa
AA seq
DB search
MSSPRSASPQQHDGAAGYGSAFASARSAASSSASGRGKTLADARVSEELEIALDLALERF
LYSDDQEMAFPSSFTSTERAYVHRLCQSLGLISKSKGKGSSRYLTVRKRNGSQVAHAEMT
CCLTPRTKQAVHSLIQRFPLTKKERIELLPKKQRGNAFAVETENKEVGKTSGRLSSGIPQ
VPLKRGESEYDSFRQSLPVFDKKEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCYE
NGIPCRMFCTQPRRLAVIAVAERVAAERREKVGQTVGYQIRLESRVSPRTLLTFCTNGIL
LRMLMAGDSALSTVTHVIVDEVHERDRFSDFLLIKLRDILQNQTNLKLIISSAALDANLF
IEYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMIKYRKEKQREEKQQSTLTEWCS
AQESNSNPESRSRRSVASVSEEYNLLDSSGDTVFNALVERDASCLEPWLIKEMDSCLSDI
WLHKDVDSFAQVFHFILTENVSVDYRHSETSATALMIAAGRGFLSQVEQLISMGASVHCK
SSNGWMALDWAKHFGQTEVVDLLESYSASMEFGNLDESSLVQANGNDLGTEDRELLKAYH
HSFNDEKVDFDLIMHLLYNICNSSDGGAVLIFLPGYDEIVSLRDRIIFDDKRFVDNAHRY
QVFTLHSNMQTLDQKNVLKTPPSGIRKIILSTNVAETSITVSDVVFVIDSGKMKEKSFDA
LSCVTMLRTVWISKASAIQRRGRAGRCRPGVCFHLFSKLRFQNMLEFQTPELRRMPLQEL
CLHTKLLAPVNCPVVDFLMKAPDPPPALIVRNAIQMLKKIDAMDVWEDLTELGYHLAELP
VEPHLGKMVLCAVVLKCLDPILTIACTLAYREPFVLPMVASQKRAAMLCRKRLAAGTFSD
HMVLLRAFQAWQKARSDGWERVFCEKNFLSHATMEIIVGMRTQLLGQLRASGFVRARGSA
DIRDVNANSENWAVVKAALVAGMYPNLVHVDRENLVLTGPEEKKVRFHPTSVLSQAQYKK
IPPSNGQAAAVQALPTDWLIYDEMTRARRIANIRCCSVVTPVTVALFSGPARLPHNALEE
PLSFRGNRVANDDSDSGMEDERSNVALLKLDEWLHFKLDSEVAGLLMQLKLKWHSLLLRR
MRAPSKPWSQADEITIRTIVSVLSTEEQFAGLLQPSGVGQRPRPVSYNELPSAPTWRSAS
TSAENELSDDSSNAEKVLRKSAHPAFHQPRRYKDKNILSSKRTSDEKSDQSSVKSTGSSS
CPSPRASPSAMSGKEIRVNFSGVPKLHQDLCLLVWYFIMRSSNLQNLDISQQKGVQSVTP
SNEQKPNGAFWEGSLVYXLFSVQGSGCFQVTYLIAQIVKTELHSGICQVVCNELATLIHE
KETKEKAEGLLQLPLQSKANIELDPQIGEQLLQLWDHPTSAGKSSTDNPWVSKITXSQKC
ASSKKMRKKMVQQGLKVLVMLCSWHLKSKRK
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcccaggagcgcctccccgcagcagcacgacggggccgcagggtacggctct
gccttcgcgtctgcacgctcggccgcttcctcctccgcgtcgggccgcggcaagacgttg
gcggatgcccgcgtctccgaggaattggagatcgcgttggacctggcgctggagcggttc
ttgtacagcgatgatcaagagatggcgtttccttcgtcttttacttctaccgaaagagcc
tatgttcaccggttgtgccagtctcttggtttgatatctaaaagtaagggaaaaggatcg
agtcgatatctaactgtcaggaaaaggaatggatcgcaagtagctcatgcagaaatgact
tgttgtttgactcccagaacgaaacaggctgttcacagtttaattcaaagatttcctctc
acaaagaaagaacgaatagaacttctgccaaagaagcagcgaggaaatgcatttgctgtt
gaaactgaaaacaaagaagttgggaagacgagcggaaggcttagcagtggtattcctcaa
gtgccgctgaaaagaggggagtcggaatatgactcctttaggcagtcattgccagttttt
gacaagaaggaggaaattgtcaaaataataaaggaaaataaagttgttctcattgtagga
gagactggatcaggaaaaaccactcaaattcctcagttccttcttgatgactgctacgaa
aatggaattccctgtcgtatgttttgcactcagccaagacgtttggcagttattgctgtg
gctgaaagagtggcagcagaaagaagggaaaaggttggccagacagttggctatcagatc
cgattagaaagcagggtttctccaaggacactgttaacgttttgcacaaatggcatactg
cttcgcatgctgatggcaggagacagtgctctatcaacagtaacacatgttattgtggat
gaagtacatgagagggatagattcagtgatttcttgttaataaaactgcgagatatattg
caaaaccagactaatttaaaactaatcatttctagtgctgctctagatgcaaatctcttt
attgagtattttggaagttgcccagtaatacacatccaaggaagaccatttgaagttaaa
gagatgtttttggaggacattttacgaagcactgggtacacaaacaaagagatgataaaa
tacagaaaggagaagcagcgagaagagaagcagcaaagcactctcactgagtggtgttct
gctcaagaaagtaatagcaacccagaatcacggagcagaagatctgttgcaagtgtatct
gaagagtataatctgctggacagcagtggtgacacagtttttaatgctctggttgagaga
gatgcaagttgtcttgaaccatggctaataaaagaaatggattcttgtctttctgacatc
tggttacataaagatgttgattcctttgctcaggtgttccatttcatcttaactgaaaac
gtcagtgttgattataggcacagtgaaaccagtgcaactgcactaatgatagctgcaggg
agaggctttctaagtcaagtagagcaattgatcagtatgggagcaagtgtccactgcaaa
tcatccaatggctggatggctttagattgggctaagcactttggacaaacagaggtggtt
gacctgttggaatcttacagtgcttcaatggaatttggaaatctggatgaaagttctctg
gtccaagcaaatggtaatgaccttggaacagaggacagagagttgttgaaagcttatcat
cacagttttaatgatgagaaggtggatttcgacctgatcatgcacttactttacaacatc
tgcaatagttctgatgggggagcagttttaatatttcttcctgggtacgatgagatagtt
agcttgagagaccgaattatttttgatgacaagagatttgttgataatgcgcacagatac
caagtattcacacttcattcaaatatgcaaactttggatcagaagaatgtgcttaaaact
ccgccttctggcatccgcaaaataattctttctactaatgttgcagaaaccagtatcaca
gtcagtgatgttgtatttgttattgattcgggaaagatgaaggagaagtcttttgatgct
ctgagttgtgttacaatgttaagaactgtgtggatttcaaaagccagcgctatccagaga
agagggagagctgggcgctgtcggcctggagtctgcttccatctcttcagcaagctccga
tttcagaatatgttggaatttcagactccggaacttcgaagaatgccgcttcaggagctt
tgtctacacacaaaactactggctccagtgaattgcccagttgttgactttctcatgaaa
gctcctgatcctccaccagctttaattgtgaggaacgccatacaaatgctcaagaaaata
gatgccatggatgtttgggaagacctcactgaacttggttatcatcttgccgaattacct
gtagagccacaccttggtaaaatggtgctgtgtgctgttgttttgaagtgcctggatccc
attctcactattgcttgcactcttgcgtatcgagagccttttgttctacctatggtggcc
tctcaaaagcgtgcagctatgctgtgcagaaaacgtttagctgcaggaacattcagtgac
catatggtgctcctcagggctttccaggcatggcagaaggcacgaagtgatggctgggag
agggtcttctgtgaaaaaaactttctttctcacgctacaatggaaatcatagtaggcatg
agaactcagttacttggtcagcttagagcttcaggttttgtcagagccagaggaagtgct
gatattagagatgttaatgctaactctgaaaactgggctgtggttaaagctgccttagtg
gctgggatgtaccccaatcttgtgcatgtggacagggaaaacctggttttgacaggccca
gaagagaagaaagtgcgatttcatcctacgtctgttcttagccaggctcagtataaaaag
attccgccatcaaatgggcaagctgcagctgttcaggcactccctactgactggcttata
tatgatgaaatgacaagagctcgcaggatagcaaatatcagatgttgttcagttgtaaca
cctgtcactgtggcactcttctctggaccagctaggttaccacataatgctttggaagag
cctttgtcctttcgaggaaatagggtagctaatgatgacagtgatagtgggatggaggac
gaaagatccaatgtggcactactgaagctggatgaatggctccatttcaaattggactct
gaagttgctggtttgctgatgcaactcaaactcaagtggcatagcttacttctgcgccga
atgagagctccttctaaaccttggtctcaagctgatgaaataactataagaacaattgta
tctgttttaagtactgaagaacagtttgcgggattgctgcagccttcaggagttggtcag
aggccaaggcctgtttcttacaatgaacttccttcagcacctacctggaggtcagccagc
acctcagcagaaaatgaattatctgatgattcctctaatgctgaaaaagttctgaggaag
tctgcacatccagcatttcatcagccaaggagatacaaagacaaaaatattttgtcttcc
aaacgaacatcagatgagaagtcagatcagtcatcagtgaaatctacaggcagcagttcc
tgtcctagcccacgtgctagtccttctgcaatgtctggaaaggaaatcagagtgaatttt
tctggggttccaaaacttcaccaagacttatgtctgctagtttggtactttataatgaga
agcagcaatctgcaaaaccttgatatttctcaacagaaaggtgtacagtctgttacgcca
agtaatgaacaaaagccaaacggagctttttgggagggcagcttggtctacnntttattt
tctgttcaaggatctggctgctttcaggtaacttaccttattgctcaaatagtgaagact
gaattgcattcaggcatctgtcaggttgtttgtaatgagttagctacattaatccatgaa
aaagaaaccaaggaaaaagctgaaggattgctacagttacctttgcagtcaaaagctaac
attgagctggacccgcaaattggagagcagttgctccagctctgggatcatcctacttca
gcaggaaaaagctcaactgacaacccctgggtgtccaaaattacttaaagccagaaatgt
gcctccagtaagaagatgaggaagaagatggtgcaacaaggcctgaaagtgttagtgatg
ctgtgcagctggcacttgaagagtaaaaggaaataa
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integrated database retrieval system
