Lagopus muta (rock ptarmigan): 125687086
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Entry
125687086 CDS
T09141
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125687086 (CHD1)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125687086 (CHD1)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125687086 (CHD1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
125687086 (CHD1)
SLIK complex
125687086 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
125687086
NCBI-ProteinID:
XP_048787814
LinkDB
All DBs
Position
Z:complement(45067424..45116139)
Genome browser
AA seq
1808 aa
AA seq
DB search
MNGHSDEESVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGS
QSESESDTSREKKQVQAKPLKADGTEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSE
EDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDGDKSSCEESESDY
EPKNKVKSRKPPSRIKPKSGKKSIGQKKRQLDSSEEEEDDDEDYDKRGSRRQATVNVSYK
EAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRIGRKGATGASTTIYAVEADGDP
NAGFEKSKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWL
KNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSW
EDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRD
YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL
GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK
QYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL
IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN
FSNMDEDDIELEPERNSRNWEEIIPESQRRRIEEEERQKELEEIYMLPRMRNCAKQISFN
GSEGRRSRSRRYSGSDSDSITERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTFR
ISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLV
GIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQ
RLAGAGNSKRRKTRSKKNKIKASKIKEEIKSDSSPQPSEKTDEDDDEEDNKDEIVSVKHL
HKKIKTEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDNKEK
RENKVKESTQKEKEVKEEKVNEIKSENKEKCKKIPLLDTPVHITATSEPVPISEESEELD
QKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQ
IKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPDVE
RLKETTNHDDSSRDSYSSDRHLSQYYDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHRDW
DHYKQDNRYYSDSKHRKLDDHRSRDHRSNLEGNLKDSRGHSDHRSHSDHRIHSDHRSTSE
YGHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTPE
HTWSSRKT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagcagtggagagtcaagcagatca
gatgatgattctgggtcagcttcgggttctggatctggttcaagctctggaagcagtagc
gatggaagtagcagccagtcgggtagcagtgactctgaatctggttcagagtcaggcagt
caatccgaatcggagtctgacacatctagagagaagaaacaagttcaagctaaaccgctg
aaagctgatggaactgagttttggaagtccagtccaagtatacttgctgtacagagatca
gcagttctcaagaagcaacagcaacaacaaaaggcagcatcatcagacagtggttcagaa
gaggactcatccagtagtgaagattctgccgatgattcatctagtgaaaccaagaagaaa
aagcataaagatgaagactggcaaatgtcagggtcagggtcagtgtcaggaactggttct
gattctgaatcggaggaagatggggataaaagcagctgtgaagaaagcgaatctgattat
gagccaaaaaacaaagtcaaaagccgtaaacctccaagcagaattaagccaaaaagtggg
aaaaagagcataggacagaagaagaggcagcttgattcatcagaggaggaggaggatgat
gatgaagattatgataagagaggatctcgtcgccaggcaacagtgaatgttagttacaaa
gaagctgaagaaaccaagacagattctgatgatttgctggaagtttgtggagaagatgtc
ccacagactgaggaagatgaatttgaaactatagagaagtttatggacagtcgaattggc
cgaaaaggagccactggtgcctcaaccaccatctatgccgtcgaggcagatggtgaccca
aatgctgggtttgaaaagtcaaaggagccaggagacatacagtatcttattaaatggaaa
ggctggtcacacatccataacacttgggaaactgaagaaacactgaagcaacaaaacgtt
aaaggaatgaagaaactggacaactacaagaaaaaggatcaggagacaaagcgatggctg
aaaaatgcttctccagaagatgtggaatattataactgccagcaggagcttacggatgat
ctgcataaacaatatcaaatagtggaaagaataattgctcattcaaatcaaaagtcagca
gctggctatccagactactattgcaaatggcagggtttaccttattcagaatgcagctgg
gaagatggtgctctcattgccaaaaagtttcaggcacgcattgatgagtattttagcaga
aatcaatccaagactactccctttaaagactgcaaggttctaaaacagagaccaagattt
gttgcactgaagaagcaaccatcttacattggaggacatgaaagtttggaattaagagat
tatcagttaaatggattgaattggctcgctcattcatggtgcaaagggaatagttgtatt
cttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactacctg
tttcatgaacatcaactgtatgggccttttctactggtagtgccactttctaccttgaca
tcttggcaaagagagattcaaacttgggctcctcagatgaatgctgtagtttacttagga
gatataactagtagaaatatgataaggactcatgaatggatgcatccacagactaagcgt
ttaaagtttaacatacttctgacgacatatgaaattttactgaaggataagtcattcctt
ggtggtctcaattgggcattcataggagttgatgaagctcatcgtttaaaaaatgatgac
tctcttctgtacaagactttgatagactttaagtccaaccatcgacttcttattactgga
acccctctgcaaaactccctcaaagagctgtggtctttgttgcatttcatcatgccagaa
aaattttcctcctgggaagattttgaagaggagcatggcaaaggaagagagtatggttat
gcaagtcttcacaaagagcttgaaccatttttactgagaagagttaaaaaagatgtagaa
aagtctttacctgctaaggttgagcaaattctgaggatggaaatgagtgcattgcagaag
caatattacaagtggattttaacacggaattataaagccctcagtaaaggttcaaaaggc
agtacctcaggctttctgaacattatgatggaacttaagaagtgttgcaaccattgctac
ctcattaaaccaccagatgataatgaattctataataaacaggaggccttgcagcatttg
atacgtagcagtgggaaactaatccttcttgacaaactactgattcggctgcgagagcgt
ggcaacagagttttgattttctctcagatggtgaggatgctggacatcctggcagaatat
ctaaagtaccgccagtttccctttcagagacttgatggatcaataaaaggggaattgagg
aagcaagcactggatcatttcaatgcagaaggatcagaggatttctgttttttactatct
accagagctggaggattaggtattaacttggcatctgctgacactgtagttatatttgat
tctgactggaatccacagaacgatctgcaggcacaggcgagagctcatagaattggacag
aagaaacaggttaatatttatcggctagtaacaaaaggatcagtagaagaagatattctt
gaaagagccaagaaaaagatggtactagaccatttagtaattcagagaatggacacaaca
ggaaaaactgttctgcatacaggttctactccatcaagctctacaccttttaataaagaa
gagttatcagcaattttgaagtttggtgccgaggaactttttaaagaacctgaaggagaa
gaacaggagccccaggaaatggatatagacgaaatcttgaagagagctgaaactcgggag
aacgagccaggtccattgactgtaggggatgagttgctttcacagttcaaggtggcaaat
ttttccaatatggatgaagatgatattgagttggaaccagaaagaaattcaagaaattgg
gaagaaatcatcccagaatcccagcggagaagaatagaggaggaggaaagacaaaaagaa
cttgaagaaatatacatgctcccaaggatgagaaactgtgcaaaacagatcagctttaat
ggaagtgaaggaagacgtagtaggagcaggagatattctggatctgacagtgactccatc
acagaaagaaaaaggccaaaaaagcgtgggagacctcgaactattcctcgagaaaatatt
aaaggattcagtgatgcagagatcaggcggtttatcaagagttacaagaaatttggtggc
cctctggaaaggttagatgctgtagctagagatgctgagctagttgataaatctgagact
gaccttagacgtttgggtgagcttgtacataatggatgcattaaggctttaaaggacaat
tcatctggacaagaaagagcaggaggtagactggggaaggttaaaggcccaacatttcga
atctcaggagtgcaggtgaatgcaaaactcgtcatctctcacgaagaagagctggcaccc
ctgcacaaatccattccttcagatccagaagaaaggaaaagatatgtcatcccatgccac
accaaggctgctcactttgatatagattggggtaaagaagatgattccaatctgttagta
ggcatctatgaatatggctatggcagctgggaaatgataaaaatggatccagatctcagc
ttaacacagaagattttacctgatgatccagataagaaaccccaggcaaagcagctacag
acacgtgcagactacctcattaaattactgaataaagaccttgcaaggaaggaagcacaa
aggcttgctggtgcaggcaattccaagagaaggaagacaagaagtaagaagaataagata
aaggcttcaaaaataaaagaagaaataaaaagtgattcttcaccacaaccctcagaaaaa
actgatgaagatgatgatgaggaggataacaaggatgagattgtttcagtgaaacatcta
cataaaaaaataaaaacagaaaaagaaaatgaagaaaagcctgagccagatattggtata
aagaaggaagctgaagaaaaaagagagacaaaagagaaggaaaataaaagggatttgaaa
agggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaagataataaagaaaag
agagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagagaaggta
aatgagatcaaatctgaaaataaagaaaaatgtaaaaaaattccattactggatactcca
gttcatattactgcaaccagcgaaccagttcctatctcggaagaatctgaagaactggat
cagaagacatttagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcactgaaacag
ctggatagaccagagaagggcctttctgaaagggagcagctggaacatactagacagtgt
ctaatcaaaattggggatcacattacagaatgcctgaaggagtacacaaatccagagcaa
ataaaacagtggaggaaaaatttgtggatttttgtctccaagtttacagaatttgatgcc
agaaagctgcacaaactctacaaacatgcaatcaaaaagcgccaagagtctcagcagcat
aatgaccaaaacattagcagcaatgtgaatacacatgtaatcagaaatccagatgtggaa
agactgaaggagactacaaaccacgatgacagtagcagggatagttattcttctgataga
catttatcacagtactatgatcatcacaaagacaggcatcagggagatgcttataagaaa
agtgactctaggaaaaggccgtattcagccttcagtaatggaaaagatcacagagactgg
gatcactacaaacaggacaacagatactacagtgatagtaaacataggaagctagatgac
cacaggagcagagaccacagatcaaacctggaaggaaacttaaaagacagccggggtcat
tcagatcaccgctcccattcagaccacaggatacactcagaccaccgttccacttcagaa
tacggtcatcacaaatcttccagagattatagataccactcagactggcaaatggaccac
agagcttctggtagtggcccgaggtcaccactagatcagaggtctccttatggttcaagg
tctcccctaggacacagatctccatttgaacactcatcggatcacaaaagtacacctgaa
catacatggagtagccggaagacataa
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integrated database retrieval system
