Lagopus muta (rock ptarmigan): 125687107
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Entry
125687107 CDS
T09141
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125687107
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125687107
Spliceosome [BR:
lmut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125687107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_22
AAA_19
nSTAND3
Ank
ATPase
Ank_4
AAA_7
AAA_23
AAA_29
PhoH
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
125687107
NCBI-ProteinID:
XP_048787871
LinkDB
All DBs
Position
Z:50538024..50684985
Genome browser
AA seq
1320 aa
AA seq
DB search
MMAAAAAAERAMSSPRSASPQQHDGAAGYGSAFASARSAASSSASGRGKTLSDARVSEEL
EIALDLALERFLYSDDQEMAFPSSFTSTERAYVHRLCQSLGLISKSKGKGSSRYLTVRKK
NGSQVAHAEMTCCLTPRTKQAVHSLIQRFPLTKKERIELLPKKQRGNAFAVETENKEVGK
TSGRLSSGIPQVPLKRGESEYDSFRQSLPVFDKKEEIVKIIKENKVVLIVGETGSGKTTQ
IPQFLLDDCYENGIPCRMFCTQPRRLAVIAVAERVAAERREKVGQTVGYQLLLESRVSPR
TLLTFCTNGILLRMLMAGDSALSTVTHVIVDEVHERDRFSDFLLIKLRDILQNQTNLKLI
ISSAALDANLFIEYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMIKYRKEKQREE
KQQSTLTEWCSAQESNSNPESRSRRSVASVSEEYNLLDSSGDTVFNALVERDASCLEPWL
IKEMDSCLSDIWLHKDVDSFAQVFHFILTENVSVDYRHSETSATALMIAAGRGFLSQVEQ
LISMGASVHCKSSNGWMALDWAKHFGQTEVVDLLESYSASMEFGNLDESSLVQANGNDLG
TEDRELLKAYHHSFNDEKVDFDLILHLLYNICNSSDGGAVLIFLPGYDEIVSLRDRIIFD
DKRFVDNAHRYQVFTLHSNMQTLDQKNVLKTPPSGIRKIILSTNVAETSITVSDVVFVID
SGKMKEKSFDALSCVTMLRTVWISKASAIQRRGRAGRCRPGVCFHLFSKLRFQNMLEFQT
PELRRMPLQELCLHTKLLAPVNCPVVDFLMKAPDPPPALIVRNAIQMLKKIDAMDVWEDL
TELGYHLAELPVEPHLGKMVLCAVVLKCLDPILTIACTLAYREPFVLPMVASQKRAAMLC
RKRLAAGTFSDHMVLLRAFQAWQKARSDGWERVFCEKNFLSHATMEIITGMRTQLLGQLR
ASGFVRARGSADIRDVNANSENWAVVKAALVAGMYPNLVHVDRENLVLTGPEEKKVRFHP
TSVLSQAQYKKIPPSNGQAAAVQALPTDWLIYDEMTRARRIANIRCCSVVTPVTVALFSG
PARLPHNALEEPLSFRGNRVANDDSDSGMEDERSNVALLKLDEWLHFKLDSEVAGLLMQL
KLKWHSLLLRRMRAPSKPWSQADEITIRTIVSVLSTEEQFAGLLQPSGVGQRPRPVSYNE
LPSAPTWRSASTSAENELSDDSSNAEKVLRKSAHPAFHQPRRYKDKNILSSKRTSDEKSD
QSSVKSTGSSSCPSPRASPSAMSGKFLFQRFARMSLEIQAWGGMAGKLPDGKGPWCTAGQ
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggcagctgccgcagcagagcgagccatgtcctctcccaggagcgcctccccg
cagcagcacgacggggccgcagggtacggctctgccttcgcgtctgcacgctcggccgct
tcctcctccgcgtcgggccgcggcaagacgttgtcggatgcccgcgtctccgaggaattg
gagatcgcgttggacctggcgctggagcggttcttgtacagcgatgatcaagagatggcg
tttccttcgtcttttacttctaccgaaagagcctatgttcaccggttgtgccagtctctt
ggtttgatatctaaaagtaaaggaaaaggatcgagtcgatatctaactgtcaggaaaaag
aatggatcgcaagtagctcatgcagaaatgacttgttgtttgactcccagaacgaaacag
gctgttcacagtttaattcaaagatttcctctcacaaagaaagaacgaatagaacttctg
ccaaagaagcagcgaggaaatgcatttgctgttgaaactgaaaacaaagaagttgggaag
acgagcggaaggcttagcagtggtattcctcaagtgccgctgaaaagaggggagtcggaa
tatgactcctttaggcagtcattgccagtttttgacaagaaggaggaaattgtcaaaata
ataaaggaaaataaagttgttctcattgtaggggagactggatcaggaaaaactactcaa
attcctcagttccttcttgatgactgctacgaaaatggaattccctgtcgtatgttttgc
actcagccaagacgtttggcagttattgctgtggctgaaagagtggcagcagaaagaagg
gaaaaggttggccagacagttggctatcagctcctattagaaagcagggtttctccaagg
acactgttaacgttttgcacaaacggcatactgcttcgcatgctgatggcaggagacagt
gctctatcaacagtaacacatgttattgtggatgaagtacatgagagggatagattcagt
gatttcttgttaataaaactgcgagatatattgcaaaaccagactaatttaaaactaatc
atttctagtgctgctctagatgcaaatctctttattgagtattttggaagttgcccagta
atacacatccaaggaagaccatttgaagttaaagagatgtttttggaggacattttacga
agcactgggtacacaaacaaagagatgataaaatacagaaaggagaagcagcgagaagag
aagcagcaaagcactctcactgagtggtgttctgctcaagaaagtaatagcaacccagaa
tcacggagcagaagatctgttgcaagtgtatctgaagagtataatctgctggacagcagt
ggtgacacagtttttaatgctctggttgagagagatgcaagttgtcttgaaccatggcta
ataaaagaaatggattcttgtctttctgacatctggttacataaagatgttgattccttt
gctcaggtgttccatttcatcttaaccgaaaacgtcagtgttgattataggcacagtgaa
accagtgcaactgcactaatgatagctgcagggagaggctttctaagtcaagtagagcaa
ttgatcagtatgggagcaagtgtccactgcaaatcatccaatggctggatggctttagat
tgggctaagcactttggacaaacagaggtggttgacctgttggaatcttacagtgcttca
atggaatttggaaatctggatgaaagttctctggtccaagcaaatggtaatgaccttgga
acagaggacagagagttgttgaaagcttatcatcacagttttaatgatgagaaggtggat
ttcgacctgatcttgcacttactttacaacatctgcaatagttctgatgggggagcagtt
ttaatatttcttcctgggtacgatgagatagttagcttgagagaccgaattatttttgat
gacaagagatttgttgataatgcgcacagataccaagtattcacacttcattcaaatatg
caaactttggatcagaagaatgtgcttaaaactccgccttctggcatccgcaaaataatt
ctttctactaatgttgcagaaaccagtatcacagtcagtgatgttgtatttgttattgat
tcgggaaagatgaaggagaagtcttttgatgctctgagttgtgttacaatgttaagaact
gtgtggatttcaaaagccagtgctatccagagaagagggagagctgggcgctgtcggcct
ggagtctgcttccatctcttcagcaagctccgatttcagaatatgttggaatttcagact
ccggaacttcgaagaatgccgcttcaggagctttgtctacacacaaaactactggctcca
gtgaattgcccagttgttgactttctcatgaaagctcctgatcctccaccagctttaatt
gtgaggaacgccatacagatgctcaagaaaatagatgccatggatgtttgggaagacctc
actgaacttggttatcatcttgccgaattacctgtagagccacaccttggtaaaatggtg
ctgtgtgctgttgttttgaagtgcctggatcccattctcaccattgcttgcactcttgcg
tatcgagagccttttgttctacctatggtggcctctcaaaagcgtgcagctatgctgtgc
agaaaacgtttagctgcaggaacattcagtgaccatatggtgctcctcagggctttccag
gcatggcagaaggcacgaagtgatggctgggagagggtcttctgtgaaaaaaactttctt
tctcacgctacaatggaaatcatcacagggatgagaactcagttacttggtcagcttaga
gcttcaggttttgtcagagccagaggaagtgctgatattagagatgttaatgctaactct
gaaaactgggctgtggttaaagctgccttagtggctgggatgtaccccaatcttgtgcat
gtggacagggaaaacctggttttgacaggcccagaagagaagaaagtgcgatttcatcct
acgtctgttcttagccaggctcagtataaaaagattccgccatcaaatgggcaagctgca
gctgttcaggcactccctactgactggcttatatatgatgaaatgacaagagctcgcagg
atagcaaatatcagatgttgttcagttgtaacacctgtcactgtggcactcttctctgga
ccagctaggttaccacataatgctttggaagagcctttgtcctttcgaggaaatagggta
gctaatgatgacagtgatagtgggatggaggacgaaagatccaatgtggcactactgaag
ctggatgaatggctccatttcaaattggactctgaagttgctggtttgctgatgcaactc
aaactcaagtggcatagcttacttctgcgccgaatgagagctccttctaaaccttggtct
caagctgatgaaataactataagaacaattgtatctgttttaagtactgaagaacagttt
gcgggattgctgcagccttcaggagttggtcagaggccaaggcctgtttcttacaatgaa
cttccttcagcacctacctggaggtcagccagcacctcagcagaaaatgaattatctgat
gattcctctaatgctgaaaaagttctgaggaagtctgcacatccagcatttcatcagcca
aggagatacaaagacaaaaatattttgtcttccaaacgaacatcagatgagaagtcagat
cagtcatcagtgaaatctacaggcagcagttcctgtcctagcccacgtgctagtccttct
gcaatgtctggaaagtttttgttccagagatttgctaggatgtctttagagatacaggct
tggggaggaatggctggaaagctgcctgatggaaagggaccttggtgtaccgctggacag
tga
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