Lagopus muta (rock ptarmigan): 125687261
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Entry
125687261 CDS
T09141
Symbol
ZCCHC7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7 isoform X1
KO
K12597
protein AIR1/2
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125687261 (ZCCHC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125687261 (ZCCHC7)
03016 Transfer RNA biogenesis [BR:
lmut03016
]
125687261 (ZCCHC7)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125687261 (ZCCHC7)
Transfer RNA biogenesis [BR:
lmut03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125687261 (ZCCHC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
AIR2-like_ZnK4
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
125687261
NCBI-ProteinID:
XP_048788194
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Position
Z:complement(74862608..74973288)
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AA seq
622 aa
AA seq
DB search
MVSGSVLTYAGQDKEPLIVPYHQGKEDKPSTLLRLNRLGSLDHNSLVSRMFYESEDTEES
DVYEDELYREDSSSEPSIDSEVEFHLYSQVHYSQNLAEISSLEVSEEAEDVAEFTDQGPA
LTVAPLDDQNIVELHDSDGEISDDPEIIVLSDTPEEDSVYKSKARKSTSPLAEGRMHTCG
SSTANRAKATERNALHTAGSGAEVSRQGPSGNFPSAGSGPLTAQEVMVIDDSSNDEEESV
LSESDNVESWMLLGCSADDKDKDIMLNLEGCGTPVGEGDTDVDWSISNKDLEAQICNYAS
VRRTSVRYYTADKNVTCRNCGRPGHLSKNCPVPKKTPPCCLCAERGHLQNTCPARFCLNC
CLPGHYFRECLERSYWNKHCSRCDMKGHYADACPEIWRQYHLTTNPGPIKAASSHSEHSA
AVYCYNCSRKGHFGYECSEKRMRGSMFPASPFIHYYDDECDLKRRANRLKRKIAELQEAG
LLPLQPETPWQEEKHGGHSCKKKPWEEHNKRNRDEHHKKKKSSSQADKQRAKRHRSDVER
GHEMEDDFPRGYHKQTSRGSKKHHKSVLQAHGSKKEYGQQLLEAAKRKKKRKKQRDASPD
INENLFLIKQRRKKSKQKSSCW
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggtctctggaagtgtcctgacatatgctgggcaagacaaagagcctctcatagttcca
taccatcaaggaaaggaggacaagccatcgactctcctgagactcaatagacttgggagt
ttagatcacaacagtttggtttccagaatgttttacgaatctgaagacacggaggagagt
gatgtttatgaagatgaactttaccgagaggattcatcctctgagccaagcattgacagc
gaggtggaatttcatctctacagccaggtccactattcccaaaaccttgctgaaatcagc
tcactggaggtgtctgaagaagcagaagatgttgcggaattcacagaccagggtccagct
ctaactgtggcaccacttgatgaccagaatattgttgaactgcacgattctgatggcgag
atttcggacgaccctgagatcattgtcttgtccgatacaccagaggaagacagtgtttac
aaaagcaaggcacgaaagtcaacaagccctttagctgaaggcagaatgcatacctgtgga
tcttccacagcaaatcgtgccaaagccaccgagcgtaatgctctgcatactgcaggatca
ggcgcagaagtttcaaggcaaggtcctagtgggaattttccctccgctggttctggacct
ctcaccgcccaagaggtgatggtaatagatgacagctcaaatgatgaggaggagagcgtg
ctatctgaaagcgataatgttgagagctggatgcttttgggatgcagtgcagatgacaaa
gacaaagacataatgttgaaccttgaaggctgcggaactcccgttggggaaggagacact
gatgtggactggtccatcagtaataaagacctagaggcacagatctgtaactacgcgagc
gtgaggcgcacgagtgttcgctactacacagccgacaagaacgttacctgcagaaactgt
gggagaccagggcatttgtccaaaaactgtccagttccaaagaaaactcccccttgttgc
ctgtgtgcagaaagaggtcatctacagaacacttgtccagctcggttttgtttgaactgc
tgtttgcctggccactattttagggaatgtcttgagagatcctactggaataagcactgc
agtcgctgtgatatgaaggggcattatgctgacgcttgcccagaaatatggaggcagtat
cacctaacaacaaaccctggaccaatcaaggcagccagttcccactctgagcactcagct
gctgtttactgctacaactgctcccggaaaggacattttggatatgagtgctcagagaag
cgcatgcgtggaagcatgttccctgcttctccattcatccactactacgacgatgaatgt
gacctcaagaggagagcaaacaggttaaaaagaaagatcgcagaactgcaagaagctggc
cttctgccattacagccagagacaccatggcaggaagaaaaacatggagggcacagctgc
aagaaaaagccttgggaggagcacaataaacgtaacagagatgagcatcacaagaagaag
aagtcgtcatcccaggcagacaaacagagagcaaaaagacacagaagtgatgttgaaagg
ggccacgagatggaggacgacttccctagagggtatcataagcagacatccaggggcagc
aaaaaacatcacaagtctgttctccaggcgcatggcagcaagaaggagtatggccagcaa
cttctggaagctgctaaaaggaagaagaaaaggaaaaaacagagggatgctagtcctgat
atcaatgagaatttattccttataaaacagaggaggaaaaagtctaaacagaaatcctcc
tgctggtga
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