Lagopus muta (rock ptarmigan): 125687417
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Entry
125687417 CDS
T09141
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmut03036
]
125687417 (SHOC1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Meiosis-specific proteins
Others
125687417 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
125687417
NCBI-ProteinID:
XP_048788498
LinkDB
All DBs
Position
Z:complement(70666315..70718910)
Genome browser
AA seq
1610 aa
AA seq
DB search
MEGFASVEEEMIRECLAKIKEYKSNVTPGLKKGKKEDPIAQPQPDRATALYGGVETNGTR
CGAVCDGCWFTEQCRCVPVKRSQEDKCRKHHKTGKMFAALKYHSTDYLYESMARQKYSIR
RLSLCFPPYFRQHEKYHLTGLFAHDQYRRPWTRITPTQNMIAVSVLDQWKKSSYVEDFLE
KKPISSIGFCVDNEVIASSNPISQIDTETYYLLEKVVCEEASTQEKYLKIDCATELKEQW
QDLHVGDEFVFVDNLKNYHKKLPNLSTLLGRLKFFCVRDPFLVSEGENLTEENIFRECLT
FRNKIEMQESKNEFQGIMEEFCKTTLEDKEYFVLPFELEFCKSSNSKSESNKIPSYLELK
ELLNIAPENMAFENMCEEVIREALKEKIANKMEVAKYCPISVVSSSNSTSMLEISDTAKH
ISYLKDEMEVPLTPLCKQQRSQVNFLCVGLQEELNPLFDNSILITEPSKEYLDSLVWQSE
KYWDNVNSLLLVEYQSFKLEHRRHSLTELKKMLSVDVETPMFMSLEKDWWLHVGLDLVCT
DTLEQFKRDSNNTNSLFSTEVETFTQFSIRQLERWPEEKNSMPDQELLSSERGQMDEVTD
LCMSSQTKMQHFGLPINAASSLKIDKTNTPLENVTGGNIQKRKIEEPVYFFNREEKTDIS
LVSVGCKDTPFKQHNSSEGQNLTSFTLDSKWDNDDSDLNNFIMLRCKRTVTQTQEKNGVD
HPEKVLQPEELHLSDHKEDSSVCEPARTEKKEQENDSSVIVKIQASESQCQSYCLLKGAA
TSALKDLTHLGVLASVSWSFDSVKFDHTRFFLRQQEKVICDRFKEGKVDEKEIILFRHAA
LVHLLVTCRDLLLTCGLDTTLGYLSKAKDIYKNILESCLNNTWRQLKIVQYSSQKKHESS
PRLAELQCRLLDWMQTYAEEQSVKVMLKGCNEXTPQSSLLRDEQVQLLKSFFAGEVLQPP
DHLCSPHLDSPQHLQVLVLGASDLDLVFRILIILRMDSEREKAALIHTVSRLEGLKAIDL
NSEKKGNILGYRDIVTNRYACVIIQNQNIGADFPWRLFSLVIEYDYSENSCWKKMCENLN
IAYMTFKTILPEAVQMGNHCGSSLLEIQIPYVFLTTEGLLNMPDFLQLLESHYSITFVER
SCSYSLRLLGDTDRYVVLTVDERTAIFLQNMDELKHEKSCDNVISKLIALSLQYTCCWVV
FYSRERLSLEYSLSGDTLLSLVLIYANLIEFTQKSEDFEVKVVLTPGIEEAALLIRQIAD
NILMTSSFSPHEWLDKSWLSVLPSETEKCLLAFPCINPLVAQLMLKKESSLNRLFLASYD
QLQELLPEVPKKVLKHFSDITSSYSTNAAAPLKTTVKRSSPPENWNIFKRLYPDCKQNSQ
SLELLAKAQTSTGPSHVNSEASFLPLKHNQSFINSDLSSYMHERPCFSEVAPERKQNFFV
VPKGSEDFDRLNAMNSFYIKGQAFRTHCISDHPSKNSEEDFFTTFSDCVPPDSSTAFLEE
FRGTAFKSPEIQIYETPWNDFSSTCTYNSFAPNLIHSDSLVDPDEIQILCFQNQDRELSG
NRKQSPPFLWAKGKKIPDSGLEEVPRIKKRRLMYERVPGRADGQTRLKFF
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctttgctagtgttgaggaggagatgatcagagagtgtctagccaaaatcaaa
gaatacaaatccaatgtcactccaggactcaaaaaaggcaagaaagaggatccgatcgcc
cagccccagccagaccgggccacagctctctatgggggcgtggagaccaatggtacgcgc
tgcggcgccgtctgtgatggctgctggtttacggagcagtgtcggtgtgttccagtgaag
cgctctcaagaagacaagtgtcggaaacatcacaaaacaggaaagatgtttgcagcttta
aagtatcactcaacagactatttatatgagagcatggcaaggcaaaagtattccatccgt
agattatcactttgctttcctccctatttccgacaacatgaaaagtatcatctgactgga
ctttttgctcatgatcagtataggaggccctggacaagaattactccaacacagaacatg
attgctgtttcagtgttggatcagtggaagaaaagttcatatgtggaggatttcctggaa
aagaaacctatcagttctatagggttctgtgtcgataatgaagtaatagcaagctcaaat
cccatctctcagattgacacagaaacatattatttactcgagaaagttgtttgtgaggaa
gcatcaactcaagagaaatatttgaagatcgactgtgctactgagcttaaggaacagtgg
caagatctacatgttggagatgaatttgtttttgttgataatctgaaaaactatcataaa
aaacttcctaatttatctacacttctgggcagacttaaatttttttgtgtgagagatcct
tttttagtttctgaaggagagaatttaacagaagagaatatttttagggagtgtttgact
ttccgaaataaaatagaaatgcaggagagtaagaatgaatttcaaggaattatggaggaa
ttctgtaaaacaacattagaagataaagagtatttcgtgttgccttttgagttagaattc
tgcaaaagcagcaacagcaaatcagagtccaataagattccatcatatttggaattgaag
gagttactaaatatagctccagaaaatatggcttttgaaaatatgtgtgaagaggtaatc
agagaagctctcaaagaaaaaattgcaaacaaaatggaagttgccaaatactgtcctatt
tcagtggttagctccagtaacagcacaagtatgttggaaatctctgacacagccaagcac
atctcatatctgaaagatgaaatggaagtacctttaactcctctatgcaaacaacaaaga
tcacaggtgaattttctctgcgtaggacttcaagaagaacttaatcctctttttgataac
agtattttgattacagagccctctaaggaatacttagactccttggtatggcaatcagag
aagtactgggataatgtgaactctcttttacttgtcgagtatcagagctttaaacttgaa
catcggcgccattctctcacagagctaaagaaaatgctgtcagttgatgtagaaacacca
atgtttatgtcacttgaaaaggactggtggcttcacgtgggattagatctggtctgcact
gatactttggagcaatttaagagggattccaataatacaaacagtttgttttctacagaa
gtagaaacatttacacaattttctatacgtcagttagaaagatggcctgaagaaaagaat
tccatgccagatcaggaattgctttctagtgaaagaggtcagatggatgaagtaactgat
ctttgcatgtcatctcagaccaagatgcagcactttggcctgcctataaatgctgcgtct
tctctcaaaatagacaaaacaaatacacctctggaaaatgttactggaggaaatatacaa
aagagaaagattgaagaacctgtttatttcttcaaccgagaagagaagacagacatatca
cttgtgtctgtcggttgtaaagatacgccttttaaacaacacaactcttctgagggtcaa
aacctcacgtcgttcacacttgattcaaaatgggacaatgatgattctgatctgaacaac
tttataatgctaaggtgcaagcgcacagtcacacaaacacaggaaaaaaatggtgtagat
catcctgaaaaagtgctacagcctgaagaactacatttatctgatcacaaagaagacagt
tccgtttgtgagcctgcaagaacagagaaaaaagagcaagagaatgacagcagtgtcata
gtcaaaattcaagcatcagaaagccagtgccagtcatattgtctgctgaagggagcagct
acttctgctttaaaagatttgactcatctgggtgtacttgcttctgtaagttggagcttt
gacagcgttaagtttgatcacacaagatttttcctaagacaacaggagaaggtgatatgt
gatcgttttaaagaaggtaaagtagatgagaaagagatcatcctgttcaggcatgctgct
ctggtgcatctgctggtgacatgtcgagaccttctgttaacatgtggcttggacacaaca
ctaggatatttgtctaaagcaaaggatatctataaaaacatcttagaatcctgtttgaat
aacacctggaggcagctgaagattgtacagtacagcagccagaaaaagcatgaatccagt
ccgagattagcagagcttcagtgtcgactgttagattggatgcaaacttatgcagaggaa
cagagtgttaaggttatgctgaaaggttgtaatgagnngactccccagtcttctcttctc
cgagatgaacaagtccagcttcttaaatctttctttgcaggagaggtgctccagccccct
gaccacctttgtagccctcatctggattcaccccaacatctccaagtccttgtgctgggg
gcctcagacttggacttggtattcaggatactaatcatactaagaatggactcagagaga
gaaaaggcagctctcattcacactgtatctagactagaaggtttaaaagccattgatttg
aattctgagaaaaaaggaaacattctgggatatagagatatcgtcaccaatagatatgcc
tgtgttattatacaaaatcagaacattggagctgacttcccctggagactcttctcatta
gtgatagaatatgattattctgaaaactcttgctggaaaaaaatgtgtgaaaatctaaat
attgcatacatgacttttaaaaccatcctccctgaagcagtacaaatgggaaatcactgt
ggttcttctcttctggagatacagattccttatgtgtttctcaccactgaaggtcttctt
aatatgccagattttcttcagcttttggaatctcactacagcattacttttgttgaaaga
agctgcagttactccttgaggctacttggagatacagaccgatatgttgtgttgacagta
gatgaacgtactgctatcttcttgcagaatatggatgagttaaaacacgagaagtcctgc
gacaatgtaatatcgaagctgatagcattatcactccaatatacatgctgttgggttgtt
ttctactccagagaaagactgagtttggagtacagtctcagcggagatactcttctcagc
cttgtcttaatttatgccaatttgatagaatttacacagaagtcagaagactttgaagtg
aaggtagttcttacaccagggattgaagaggcagcactgttaattcgtcaaatagctgac
aacattttgatgacatctagtttcagtccccatgaatggctggacaaatcttggctttct
gtcttgccatctgagacggagaaatgcttgcttgcttttccttgtatcaaccctctggtt
gctcagctgatgctaaagaaggaatcttctttgaacaggctctttctggcaagctatgat
caacttcaggaattactaccagaggttccaaaaaaagttctaaagcattttagtgacatt
acctcttcgtacagcacaaatgctgctgcgccactgaaaacaacagtgaaacgttcatca
cctccagaaaactggaatatctttaaaagactgtatccagattgtaagcaaaattctcag
tctttagagttgctagctaaggcacaaaccagcacagggccatctcatgtgaattctgaa
gcctcgtttcttccattgaaacataatcaaagttttatcaactctgacctttcaagctat
atgcatgagagaccatgtttttcagaagtagctccagagagaaaacagaatttctttgtt
gtaccaaagggcagtgaagattttgatcgtctaaatgctatgaattctttttacattaaa
ggtcaggctttcaggacacactgtatctctgatcatccctccaaaaattctgaagaagat
ttctttacaactttcagtgactgtgtacctcctgacagctctacagcttttctggaagaa
tttagaggcacagcatttaagagcccagaaattcagatttatgagactccatggaatgac
ttttcatccacttgcacatacaattcatttgcgcctaacttaattcattctgattccctt
gttgatccagatgaaattcaaattctgtgtttccaaaaccaagatcgagaactttcagga
aacagaaagcaaagtccaccattcttgtgggcaaaaggaaaaaaaataccagattcggga
cttgaagaagtaccaagaattaaaaaaaggagattgatgtatgaaagagtgcctggaaga
gctgatggacaaacacgccttaaattcttttga
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