Lagopus muta (rock ptarmigan): 125687789
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Entry
125687789 CDS
T09141
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125687789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125687789
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125687789
Spliceosome [BR:
lmut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125687789
Complex C
U4/U6.U5 tri-SnRNP related factors
125687789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
125687789
NCBI-ProteinID:
XP_048789009
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MWTGRMRRVARRRKRSENRRGGRKWEHSGAGSGNMAAALERWVAGELQELLGMSGRHVPA
FLVALAARSRSVEELLERLRETEALRVEEPRVREFXEELWGKVPREPPKEPPGRAAERAA
LELQRRSQGYRPIESDDEDDERRSDPIPTPQRRRRRHLRRRRSESPDKESPEPSPAPAPE
PSEEPEAEWEASERERLRDLEERDAFAERLRRRDRDRTRNVLTRPDAKAYEEAQKRLKVA
EEDQKTMVPELRKKSRREYLAKREQDKLEELEAEIADEEYLFGEETLTSSERRELEYKRR
VRDLAREYKRAGEKEKLEKSNRYYMPEETRDKKIPEREDPGAEEERLAPRDEQRRWEEER
MGAAALRFGARDAAQRRPPPDYDFILEEDEMIQFVSAVQMKGTEPEKEAPAPVPESERRR
RSAQEVRRSLPIFPYRDELVAAINQHQILVIEGETGSGKTTQIPQYLHEEGYTRQGMKIG
VTQPRRVAAMSVAARVAVEMGTKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEP
DLASYSVIMVDEAHERTLHTDVLFGLVKDIARFRPELKVLVASATLDTQRFSAFFDDAPV
FRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEACVELLQ
ERCRRLGSKMAELLVLPIYANLPSDMQARIFEPTPPGARKVVVATNIAETSLTIDGIVYV
LDPGFCKQKSYSARTGMESLIVTPCSRASANQRAGRAGRVAPGKCFRLYTAWAFQHELEE
TAVPEIQRADLGCLVLLLKSLGVNDLIHFDFLDPPPHEALLLALEQLYALGALNHLGELT
TLGRRMAELPVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDRVLHADSARX
GFYIPGGDHLVLLNVYNQ
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtggacagggcgcatgcgcagagtggcgcggcgcagaaaacgaagtgaaaatcgtcga
ggcggccggaagtgggagcatagcggcgccggaagtgggaacatggcggccgcgctggag
cgatgggtggcgggggagctgcaagagctgctggggatgagcggccgccacgtccccgct
ttcctggtagctctggcggcgcggagccggagcgtagaggagctgctggagcggctgagg
gagacggaggcgctgcgggtggaggagccgcgcgtcagagagttcngcgaggagctgtgg
ggaaaggtgccccgagagccccccaaggagcccccagggcgggcagccgagagggcagca
ctggagctgcagcgccgcagtcaaggttaccgccccatagagagcgacgatgaggatgat
gagcggaggtccgaccccatccccaccccacagcgtcgtcgccgtcgccatctgcgccgt
cgccgatccgaatcgcctgacaaggagagccccgagccgtccccagcaccagctccggaa
ccctcagaagaaccagaggcagaatgggaagcgtcggaacgggaacgtcttcgggacctg
gaggaacgtgacgcctttgctgaacgtctccgccgccgcgaccgcgaccgcacgcgcaac
gtcctcacccgccccgatgccaaggcctatgaagaagcccaaaaacgcctcaaagttgct
gaagaagaccaaaaaaccatggttcccgagctccgcaagaaatcccgacgggaatatttg
gccaaaagggaacaggacaaactggaggagctggaagcggagattgctgacgaggaatat
ctttttggggaagaaaccctaacgagttccgagcgtcgggagctggaatacaagcggaga
gtgcgggatttggcacgggaatacaagagggcgggagagaaggaaaagctggagaagagc
aaccgctactacatgcctgaggagacacgggataagaaaatcccagaacgcgaggatccc
ggtgcagaggaggaacgtttggcccccagggatgagcaaaggcgatgggaagaggaaagg
atgggggctgcagctctgcgtttcggggctcgcgatgccgcccagcgtcgaccccccccc
gattacgacttcatcctggaggaggatgagatgattcagttcgtcagcgccgtgcagatg
aagggcacagagcctgagaaggaagcccccgccccggtgccggaatcggagcgtcgtcgt
cgttcagctcaggaggttcgtcgctcccttcccattttcccttaccgggatgaattggtg
gctgccatcaaccagcatcaaatcctggtgatagaaggggaaactggatccgggaagacc
acccaaatcccccaatatcttcacgaggagggatacacacggcaggggatgaagatcggg
gtgacgcagccaaggcgcgtggctgccatgagcgtggctgcacgggtggccgtggagatg
ggcaccaaactgggcaacgaggtggggtacagcatccggtttgaggactgcacgtcggag
cgcacggtgctgaagtacatgacggacgggatgctgctgagggagttcctcaccgagccc
gacctggcgtcgtacagcgtcatcatggtggacgaggcccacgagcgcacgctgcacacg
gacgttctctttgggctggtgaaggacatcgctcggttccgacccgagctgaaggtcctg
gtggcctcggccactttggacacccaaaggttctccgccttcttcgacgacgctcccgtc
ttccgcatccccgggcgtcgcttccctgtagacatctactacaccaaggcacccgaggcc
gattacctggaggcctgtgtggtgtcagtgctgcagatccacgtcacgcagcccccgggg
gacatcctggtcttcctcactgggcaggaggagattgaggcgtgtgtggagctgctgcag
gagcgctgccgccgcctgggctccaagatggcggagctgctggtgctgcccatctatgcc
aacctcccctccgacatgcaggctcgtatctttgagcccacgccgccgggagcccgcaag
gtggtggtggcgacgaacatcgcggagacgtcgctgaccatcgatggcatcgtttacgtt
ttggaccccgggttctgtaagcagaagagttacagcgccaggaccggcatggagtccctc
atcgtcactccctgctccagggcctcagccaatcagcgcgcagggcgggctggccgcgtg
gctcctgggaaatgtttccgcctttacacggcctgggctttccaacacgaactggaggaa
acggccgtgcccgaaatccagcgcgccgacctgggctgcctcgtgctgctgctcaagagc
ctgggtgtcaatgacctcatccacttcgacttcctcgaccccccgccccacgaggctctg
ctgttggcgctggagcagctctacgccctcggggccctcaaccacctcggggagctcacc
acgctgggccggcgcatggcggagctgccggtggagcccatgttggccaaaatgatcctc
gcgtccgagcagtacggctgcacagaggaggtgctgacagtggcagccatgctgtcggtg
aacaacgccgtcttttaccggcccaaagatcgagtgctgcacgcagacagcgcccgcnct
ggcttctacatcccggggggggaccacctggtgctgctcaacgtctacaaccag
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