Lagopus muta (rock ptarmigan): 125688095
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Entry
125688095 CDS
T09141
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125688095 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125688095 (PAN3)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125688095 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
125688095 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Pkinase
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
125688095
NCBI-ProteinID:
XP_048789615
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All DBs
Position
1:complement(174095605..174172419)
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AA seq
909 aa
AA seq
DB search
MNPSGLPCSSPSPVLGPPAAGVGAAGPAGGGGGAGAGGGGGGGAVKLKFCRYYAKDKTCF
YGEECQFLHEEPGAAPAGPGPAAPLGALPLGLPPAAAGPGYPVPHGASPGPAAAVVGPKK
AELGAGGGGGGGGGGAGLDGPRLAIPGIDGGGLADASLTDSYFSTSFIGVNGFGSPAESK
YPMMQRMTNSSSSPSLLNDSAKQYAGHDPLTSPNSSLFNDFAALSVSQRRKLAKPAFPSF
ITDLEDRYNTVLPRKYRLGMLDERIVPVGSKARKSKNPIGCLTDRCKTGVPINMVWWNRV
TENNLQTPNPTANEFIPKGGSTSRLSSVSQSSMSAFSQALFSHPSMGSPATAGLAPGMSL
SAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTSASASVANAVSQPPSTGQVIQKET
VGGTTYFYTDTTPAPLTGMVFPNYHIYHPAAPHVAYMQPKANAPSFFMADELRQELINRH
LITMAQVDQADIPAVPAEVDSYHSLFPLEPLPPPNRIQKTSNFGYITSCYKAVNSKDDLP
YCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFGEHSLVFAYDFHAGGET
MMSRHFNDPSADAYFTKRKWGQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLA
CRVMDPTKILVTGKTRLRVNCVGIFDVLTFDNSQNNPLALMAQFQQTDLISLGKVVLALA
CNSLSGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRLRSVNDIMPMIGARFYTQLD
AAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHL
FHQVTEAGTPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQE
LIAAANGQL
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcggcctgccctgctcctcgccgtcgccggtgttggggccgccggcggcg
ggggtcggcgcggcggggccggcgggcggcggcggcggggcgggggccggaggaggcgga
ggcggcggggccgtgaagctgaagttctgccgctactacgccaaggacaagacctgcttc
tacggcgaggagtgccagttcctgcatgaagagcccggtgccgcccccgccggcccaggg
cccgccgctcccctcggcgcgctgcccctcggcctccccccggccgccgccgggcccgga
tacccggtgcctcatggggccagcccgggcccggcggcggcggtggtggggccgaagaaa
gccgagctgggggcgggaggcggcggaggaggaggcggcggcggcgcggggctggatggc
ccgcggctggcgattcccggaatagatggcggtgggttagctgatgctagtctcacagat
tcttactttagcaccagcttcattggcgttaatggatttggaagtcctgctgaatccaag
tatcccatgatgcagaggatgacaaatagcagcagctctcctagccttctcaatgacagt
gccaagcaatatgcaggccatgatccactaacttcaccaaattcatccttgtttaatgac
tttgctgccctcagtgtgtctcaaaggagaaagctggcaaaaccagcatttccttcgttt
atcactgacttggaggacagatataatacagtcctgcccaggaagtatcgactggggatg
ctggatgagaggatagttccggtgggatcaaaagcaagaaaatcaaagaaccctattggc
tgtctgactgacaggtgtaaaacaggagtacccatcaatatggtttggtggaacagagtc
acagaaaacaatttacagacaccaaaccccactgcaaatgaatttattcctaaaggagga
tcaacctccaggctgagtagtgtatcccagtcaagtatgtctgccttctctcaagccttg
ttctctcatccctccatgggaagtcctgctactgctgggctagcaccaggaatgtcactg
tcagcgggatcttctcctcttcattctcccaaaataactcctcatacatctcctgctcct
cgacgaagaagtcatactcctaacccagcaaactatatggtgcctactagtgcctctgct
tctgttgctaacgctgtctctcagcctccatctactggccaggtgatccagaaggaaaca
gtgggtggaacaacatacttctatactgatacaactccagcacctctcacaggaatggta
tttccaaactaccacatttaccatccagctgcacctcatgttgcttatatgcagccaaaa
gcaaatgcaccttccttcttcatggcagatgagctcagacaggaactgatcaatagacac
ctaataacgatggcccaggttgatcaggctgatattcctgcagttccagcagaagtggac
agctaccacagtctctttcctttagaaccattgccaccacccaatcgcatacagaaaacg
agcaactttgggtacattacgtcatgctataaagctgtaaatagtaaagatgacctgcca
tattgccttcggaggatacatggttttcgtcttgttaacacgaagtgcatggtattggtt
gacatgtggaaaaaaattcagcactcaaatatagtaaccttacgtgaagtgtttaccact
aaagcatttggagaacattctcttgtttttgcatatgattttcatgctggaggagagact
atgatgagcagacacttcaatgaccccagtgctgatgcctatttcacaaaaagaaaatgg
ggtcagcatgatggacctctaccacgacagcatgcgggtttgcttccagagtcattgata
tgggcatatattgtgcagctcagctctgccttacggaccattcatacagcaggactagca
tgcagagttatggatccaacgaagattctagtcactggcaagacaaggttacgagtaaat
tgtgttggaatctttgatgttctaacatttgacaacagtcaaaataatccactggcgtta
atggctcagtttcagcaaacagatctgatctccctggggaaagttgtgttggctttggct
tgcaattctttatcaggaattcagagagagaatttgcagaaagcaatggaactggtgaca
atcaactattcctctgatctgaagaatctgatcttgtatttgctgactgaccaaaacagg
cttcgcagtgtaaatgatatcatgcctatgattggtgcgcgattctatactcaattggat
gctgctcaaatgagaaatgatgttattgaggaagaccttgcaaaggaggtgcaaaatgga
aggttgtttaggcttctagcaaaattgggaacaatcaatgagaggccagagtttcagaaa
gacccaacgtggtcagaaactggagacaggtatttactaaagctctttcgagatcacctt
ttccatcaggtgacagaagcgggtactccttggattgacctcagtcacattatctcttgt
cttaacaagttagatgctggtgtgccagaaaaaataagcctcatttccagagatgagaag
agtgtacttgtggtaacttacagcgatttaaaacgctgctttgaaaatacttttcaagaa
ctgattgcagccgcaaatggtcagttgtag
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