Lagopus muta (rock ptarmigan): 125688193
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Entry
125688193 CDS
T09141
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125688193 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125688193 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125688193 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmut04147
]
125688193 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125688193 (COL4A2)
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125688193 (COL4A2)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125688193 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125688193
NCBI-ProteinID:
XP_048789863
LinkDB
All DBs
Position
1:137841938..137982260
Genome browser
AA seq
1715 aa
AA seq
DB search
MDLSPLPGARVFVCQDVGLLLVLLEVVLLAGRVDAGGKSYTGPCGGRDCSGGCQCFPEKG
ARGQPGHLGSQGLPGPPGLMGIPGLQGPKGHKGERGHPGISGPKGEMGLRGVTGFPGADG
IPGHPGQPGSRGKPGHDGCNGTVGDPGDPGTPGHSGFPGTIGVQGPKGQKGEPYVLPPDI
ASRHRGEPGDPGFAGFPGAPGTLGIQGPIGPRGMPGRPGPPGPPGPQGPQGNRGLGFYGE
KGEQGAPGPPGPPGLPTRELIGVPTDKHKGERGEPGQKGEAGFPGVLLFTPEKGEEGVMG
FPGQRGLPGNDGFPGLSGERGFPGLDGQPGQYGPRGGKGEQGEMGPPGPPAYVPYRIPRK
GVRGDPGFPGASGLQGEPGEQGDRGLPGIPGFSDGDADKPGLPGEIGPKGEKGEEGSPAY
QAGPPGFPGKHGEPGLRGPPGPPGAPGSLFGLKGQEGTPGRPGAQGFPGPRGQRGPKGEE
GDCSTCLLSDELRRGSTGPRGPPGFPGTPGQPGRKGEPGDQGPHGIPGYAGAKGQSGQEG
FPGPKGEKGDSIYITTKGTKGIRGDPGLPGIRGEDGFPGRDGLDGLPGLPGLPGDGIRGL
PGDPGYPGELGPKGFPGETGLPGGGFPGPKGYRGPPGDDGTDGSPGVPGLPGPPGEPGQI
DCGQVIEDFPRGDATDPIWSGGGCVRPPKGSQGKPGLPGATGTKGARGFPGDPGPMGFPG
LNGTRGDPGREGYPGPPGFTGPRGDSGPNGLPGLQGHPGLMGKSGAPGLDGQKGAPGDVL
RAAAGPRGDAGLPGFPGLKGAPGDQGIPGVRGADGNPGLPGPKGDPGLQGLPGLMGLPGT
PGTHGFPGPPGNPGPDGGPGSQGPLGPPGARGEDGEQGFPGLVGIKGQSGDKGETGFPGL
QGIPGVTGPPGISGMDGFPGDKGSRGSPGIDGFKGMPGLKGRPGIKGIKGEFGLFGARGD
KGAQGARGFKGDRGEQGPPGEPPKPKPSMMMKVKGEKGDAGETGTKGFFGIKGSKGMPGL
PGKTGIPGSPGHPSYVPGVKGDIGAKGLTGLKGYPGPTGSPGIRGFPGSTGGRGDKGAPG
SSGHFGTPGSHGEIGEPGDTINLPGMPGLKGEVGVPGLTGLRGGPGQKGEGGDPGLPGIE
GLKGIQGVPGSLGQQGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGSRGIS
GLHGLPGTKGLPGSPGPDGYGSAGFPGPVGDKGEAGEPSRVEGSQGPPGQKGDRGVPGIQ
GPFGIPGQDGLPGPPGISNISGYPGDIGSPGLDGVPGYPGLHGQPGIPAPPGSKGESGRA
GVSGQAGPKGTRGDPGLQGRPGIPGYPGPKGRKGEQGVIGFIGTVGFPGDLGPIGPKGDR
GLTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGSTGPQGSPGDTGPQGPPGEPGFRGLPGE
PGLQGRGGIPAPPGSRGEQGAMGFQGPVGFEGQPGRPGSPGLPGMPGRSVSIGYLLVKHS
QSDQEPMCPIGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICY
YANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQEASIPRCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacctctcgccgcttcccggcgcgcgtgtttttgtttgtcaggacgtggggcttctg
ctggtgctgctggaggtcgtgctgttagccggcagagtcgatgccggtggaaagagttac
acaggaccatgtggaggaagagactgcagtggaggatgtcagtgtttccctgaaaaagga
gcccgtggccagccaggacaccttggatcacaggggctccctggaccaccgggattgatg
ggaatcccaggactgcaaggtcctaaaggtcacaaaggtgaaagaggacatccaggaata
agtggacccaaaggagaaatggggctaagaggagtcactggtttcccaggggcagatggc
attcctggtcatccagggcagccaggatcaagggggaagccaggtcatgatggctgtaat
gggacagtaggtgacccaggtgacccaggaacaccaggacactctggtttccctggtacc
attggagttcaaggaccaaagggccagaagggtgagccctatgtgctaccgccggacatc
gccagccgacatcggggggagcctggggatccaggatttgctggttttccaggagctcca
ggtacactgggtattcaaggacctattggtccaagaggaatgccaggaagacctggacca
ccagggcccccaggaccacaaggaccacaaggcaacagaggtcttggcttttatggagaa
aaaggtgaacagggcgccccaggtcctccaggtccacctgggcttcccacaagagaactg
attggtgtccccactgacaaacacaaaggtgaaagaggagagcctggacaaaaaggggaa
gctggatttccaggtgtacttctcttcactcccgaaaaaggtgaagaaggggtaatgggc
ttcccaggacaaaggggactgcctggtaacgatggtttcccaggacttagtggagaaaga
ggttttccaggattggatggtcaaccaggtcaatatggtcctagaggaggcaagggggag
cagggtgagatgggtcctccaggaccacctgcctatgttccttaccgcattccaagaaaa
ggtgtaagaggtgatccaggctttccaggtgcttctggactccagggagaaccaggagag
cagggtgatcgtgggctgcctggtattccaggattctctgatggagatgcagataagcca
ggcttacctggagagataggaccaaaaggtgaaaaaggtgaagaaggatctcctgcttat
caagcaggcccgcctgggtttccaggtaaacatggcgaaccaggactccgtggtccacct
ggtccccctggagctccaggttctctctttggattaaaaggacaagaagggacaccaggt
agacctggtgcacaaggttttcctgggccaagaggacaaagaggacctaaaggcgaagaa
ggtgactgcagtacatgccttttgagtgatgaactcagaaggggctctactggcccccgt
ggtcctcctggttttccaggaacccctggccagcctgggagaaaaggagaacctggtgat
caaggtccacatggtattcctggctacgctggagcaaaaggacaatcgggccaagaagga
tttcctggaccaaaaggagaaaagggagattctatatacataactactaaaggcaccaaa
ggaatccgaggagatcctggacttcctggtatcagaggggaagatggtttcccaggcaga
gatggattagatggtttaccaggattgcctggccttccgggtgatggtatcagaggtctc
cccggggatcctggttacccaggagaattaggcccaaagggcttcccaggagaaacaggc
ctgccgggtggaggatttcctggcccaaaagggtaccgtggtcctccaggtgacgatgga
acagatggaagccctggggttccaggtctgcctggtccaccaggagagcctggccaaata
gactgtgggcaggtgattgaagattttcctagaggagatgcaactgatccaatatggtca
ggtggaggctgtgtgaggccaccaaagggatctcaaggcaagccagggctgccaggagcc
acaggtactaaaggtgcaagaggattcccgggtgatccaggcccaatgggattcccaggg
ctaaatggtacacgaggtgatccgggtcgggaaggatacccaggtcctccaggctttact
gggccccgaggagacagtggcccaaatggcttacctggactacagggacatccaggtctt
atgggaaagtctggtgctccaggactggacggacagaagggtgctcctggtgatgttttg
agagcagcagcaggtcctcgaggggatgctgggctgcctggcttccctggcttgaaaggt
gcaccaggagatcaaggaataccaggagttagaggagcggatggtaacccaggattgcca
ggccccaaaggtgatccagggctgcaaggtctccctggtttgatgggtttaccaggaaca
ccaggaactcatggattcccagggccaccaggaaaccccggccctgatggtggacctggc
tctcaaggaccccttggtccaccaggtgcaaggggagaagatggtgagcaaggctttcct
ggtctggtgggcataaaaggtcagtctggtgataaaggtgaaacaggtttcccaggatta
caaggtatccctggcgtgactggtccccctggcattagtggaatggatggatttccagga
gacaaaggctcaagaggttcacctggcattgatggtttcaaaggcatgccaggcctgaaa
ggaagaccaggaatcaaaggaatcaaaggagaatttggcttatttggggctcggggtgat
aaaggcgcgcagggtgctcgaggctttaaaggtgaccgtggagaacaaggtcccccagga
gagcccccgaagccaaagcctagcatgatgatgaaagttaaaggtgaaaaaggagatgct
ggagaaactggcaccaagggattctttggcataaaaggtagcaagggaatgccaggcctt
cctggtaagacaggaattcctgggtccccagggcaccccagttatgtgcctggtgtgaag
ggggacattggtgcaaaagggctgacgggtctgaaagggtatcctggtccaactggctct
ccaggcatcagaggctttcctggcagcacaggaggcaggggagataagggtgccccagga
agttcgggtcattttggtactcctggctcccatggtgaaattggtgagccgggcgatact
ataaacttaccaggaatgccaggcctgaaaggggaagttggtgtgccgggtcttacaggc
ttaagaggaggccctggacaaaaaggcgaaggaggtgatcctggtttacctggcattgaa
ggcctcaagggcatacagggtgtgcctggctccttgggacagcaaggtttgccaggactg
gtcggccctccagggcagcaaggaagccctggaacgcctggattccaaggggaaaaagga
actcctggctggcctggcttaccaggacaagcaggcttacctggctcaagaggaatcagt
ggactgcatggtttaccaggcactaagggcttaccaggatcaccaggtccagatggctat
ggctctgcaggcttcccaggtcctgtgggtgacaaaggagaagcaggagagccaagcaga
gtggagggcagccaaggcccgccgggtcagaagggagacagaggtgttccaggaatccaa
ggaccctttggcattcctgggcaggatggacttccaggccctcctgggatttccaatata
tcaggatatcctggtgatataggttcaccaggtctagatggagtgccaggctatccagga
ctacatgggcagcctggaataccagctccaccaggaagcaagggagaaagtggacgagca
ggtgtgagcggacaagctggtcccaaagggacaagaggtgatcctggactacaagggaga
cctgggattcccggttatcccggaccaaaaggtcgtaagggtgaacaaggtgtcattggc
tttattggcacagtaggatttccaggtgatctgggacccatcggacccaagggggataga
ggacttactggctttcagggccctccaggctctcctgggttgccgcctcttcctccaagg
ctggttgctgagcaaggttcaccaggtccccgtggaagtacaggacctcagggaagtcca
ggtgatacaggacctcaaggtccaccaggagaaccaggtttcagaggcttacctggagaa
ccaggactccagggcagaggtggcattccagctcctcctggatccagaggtgaacaagga
gcaatggggtttcaaggtccagtgggatttgaaggccagccaggtcgccccggtagcccc
gggctgccaggcatgccgggtcgcagcgttagcatcggctacctgctggtgaagcacagc
cagtctgaccaagagccaatgtgcccaattggcatgaacaaactctggagtggctacagc
ctcctgtacttcgagggacaagagaaagcacacaaccaggacctagggctggctggctcc
tgcttggctcgtttcagtacaatgccattcctctactgtaaccctggggatatttgttac
tatgcaaatcgaaatgacaaatcctactggctctcaactacagcacctcttccaatgatg
cctgtggcagaagaagaaattaggccatatatcagccgctgctctgtgtgtgaggcccca
gctgtggcaattgctgtccacagccaagaagcttctattcctcgctgccccgaaggctgg
cgcagtttgtggattggatattccttccttatgcacactgcagccggtgatgaaggtgga
ggacagtcgctggtctctcctgggagctgcctggaagatttcagggctactcccttcatc
gagtgcaatggggcacgtggaacctgtcattactttgccaataagtacagcttctggctc
actacgattgaccagcccttccaaagcaagccctcggcagatacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaaaaatttatag
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integrated database retrieval system
