Lagopus muta (rock ptarmigan): 125688194
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Entry
125688194 CDS
T09141
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04382
Cornified envelope formation
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125688194 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125688194 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125688194 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125688194 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmut04147
]
125688194 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
lmut00536
]
125688194 (COL4A1)
Exosome [BR:
lmut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125688194 (COL4A1)
Glycosaminoglycan binding proteins [BR:
lmut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125688194 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125688194
NCBI-ProteinID:
XP_048789864
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All DBs
Position
1:complement(137732344..137841932)
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AA seq
1670 aa
AA seq
DB search
MWRWLGFGLLLSAELSAVSAAGCSSSCGKCDCSGVKGQKGERGLPGIQGVIGFPGMQGPE
GPPGPPGLKGDTGEPGLPGTKGTRGPPGPSGFPGNPGIPGIPGQDGPPGPPGIPGCNGTK
GERGPVGPPGLPGLTGSIGPPGPPGIKGDPGEVIGLLPPSVLKGDKGFPGQPGLPGPPGT
PGFQGPMGPPGIPGEPGRPGPPGPPGEKGYMGLGFQGPKGEKGEQGIQGPPGPPGPTPHM
KEKGSEIIKGEKGEPGEKGEQGVPGLPGSGYRGEKGEPGKPGPRGKPGKDGEPGPKGEAG
LPGGFGIPGRPGEPGAKGEKGDQGPQGPPGRIIDAGPIDTFGEKGDPGVSGLPGLKGQKG
EKGFPGAQGIPGIPGRPVPDMVGSPGVPGQRGEKGEKGSPGFPIPGPPGRDGFPGPPGLP
GPPGPPGVTDGIDQCQQGQPGAPGIPGPPGQHGFPGEMGEKGEKGETCALCDKVGPPGLP
GPQGLPGPAGFPGQSGFKGDRGLPGLDGLPGVPGPPGAPGLIGRPGAKGEPGDFTYDSIL
KGEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGE
RGLPGPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGF
PGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFPGQPGSPGLPGTPGTPGLD
GFPGTPGLQGQKGEPGVGLPGPKGLPGIPGPAGIPGEKGNPGLPGLRGEQGFPGVPGQQG
FRGDPGLPGLQGLPGPQGSPGVGPPGLPGPAGQPGPEGPPGFPGIKGERGFPGIPGLDRP
GPKGDKGSQGQPGVPGSVGLPGLPGPQGSVGLKGSAGAKGEMGVMGTPGLPGTPGPIGDR
GLPGEKGSQGLKGVVGPQGDPGVKGDKGEAGLPGIPGSMDTMDMVSLKGQKGDPGEKGDL
GLPGEKGLRGEYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLP
GTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSG
DKGEKGNAGIPGMPGSPGPKGSPGMAGFPGNPGLHGAKGEKGLPGLSGIPGLKGEPGEPG
VPGPAGAIGQKGEPGYDGIPGTAGAKGEQGVPGRGLPGFPGAKGDKGAKGEVGFPGSPGI
PGIPGLKGEQGYAGPPGPKGNQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPP
GLKGAKGEQGSDGWPGTPGGPGDKGDPGFQGLPGSPGLPGGAGEKGDLGPPGVPGVPGPK
GSAGFPGLKGERGDQGLPGSKGLQGPPGPPGAFQLIKGDPGLPGPVGPVGLKGFPGLPGP
KGQQGATGPSGVPGPPGSPGFDGRPGQKGEVGPYGPPGPRGIPGPPGPEGLPGAMGPPGA
ASVAHGFLVTRHSQTTEEPQCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIRPFISRCSVCEAPAMVIA
VHSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRNT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgttggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtctgcc
gcgggttgttcttctagttgtggaaaatgtgactgcagtggagtaaaaggacaaaaggga
gaaagaggccttccgggaatacagggtgtgattgggtttcctggaatgcaaggacctgaa
ggtccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaaca
aaaggaacaagaggcccaccaggaccatcaggatttccaggaaacccaggcatccctggc
attcctggacaagatggccctcctggtccacctgggattccaggatgtaatggcacaaag
ggtgaaagaggtccagtaggtcccccaggtttaccaggactgactgggagcataggaccc
ccaggacctcctggaattaagggagatccaggtgaagtgattggtcttctacctcctagt
gtgctaaaaggtgataaaggctttcctggccaacctggactacctggtccacctggaact
ccagggtttcagggaccaatggggccaccagggattccaggagaaccaggtcgccccggg
ccgccaggaccaccaggcgagaagggctacatgggcttgggctttcaaggtcccaaaggt
gaaaagggagaacaagggatccagggtcccccagggccaccaggaccaacaccacacatg
aaagaaaaaggaagcgaaatcataaagggagaaaagggtgagccaggtgaaaagggtgag
cagggagtcccaggattgccaggctcaggttacagaggagaaaaaggtgaacctgggaag
cctggtccacggggaaagcctggaaaagatggtgaaccaggaccaaaaggagaagccggc
ttgcctggagggtttgggattccaggacggcctggggaacctggtgctaagggtgaaaaa
ggtgatcaaggtcctcaagggcctccaggaagaattatagatgctggaccaatagatact
tttggtgaaaagggagaccctggcgtttcaggtttgcctggactaaaaggtcaaaaaggt
gaaaaaggtttccctggtgcacaagggatcccaggaattccaggtcgtccagttccagac
atggtaggatcacctggtgtccctggccagagaggtgaaaaaggtgaaaagggctctccg
ggattccctatacctggacctcctggaagagatggtttcccaggcccgcccgggttgccc
ggcccaccaggtcctccaggtgtaacagatggaattgatcaatgtcagcaggggcaacct
ggtgcaccgggtatacctggacctccagggcaacatggatttccaggagagatgggagag
aaaggtgaaaaaggtgaaacctgtgccttgtgtgataaagtaggacctcctggacttcca
ggaccacaaggactaccaggtccagcaggttttccggggcagtcaggtttcaagggagac
agaggcttacctggacttgatggccttccaggcgtgcctgggcctccaggcgctccagga
ctcataggtcgccctggcgccaaaggagaaccaggagattttacatacgattccatcctg
aaaggtgagaagggagatcctggttttccaggacaaccaggtatacctggaagagaagga
acaccaggaaaagacggattgccaggtcctcaaggtccaaaaggcgcatcgggtacagct
ggcttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggcgaa
agaggtttacctggccctcctgggataggcactgcagggctacctggtgacaaaggagac
agaggttttgctggaaccccaggtttacctggtcttccaggagcaaagggtgaagcagga
cgaactgtaccactccctggacctcctggggcagatggccttcctggaccacctggtttc
cctggaccccaaggtgacaaagggaatcctgggcttccagggagacctggcctgccagga
gaaaaaggtgctgttgggcagccaggtatagggtttcctggacctccaggacccaaaggt
tttccaggtcagcctggctcacctggtctgccaggaactcctggaacccctggcctggat
ggttttccaggcacaccaggtttacaaggacaaaaaggtgaacctggagtgggtctccct
ggtcctaaaggattaccaggcatcccaggcccagctggcatccctggagaaaaaggaaat
ccagggctgcctggcttacgaggtgaacaaggattcccgggtgtacctggacaacaagga
ttcagaggagatccaggcctccctggattacaaggcttgccaggcccccaaggctcacca
ggagtgggcccaccaggattgccagggcccgctgggcagccgggacccgaaggaccacca
ggatttcctggaataaaaggagaaaggggcttccctggtatcccaggtctagatagacca
ggaccaaaaggcgataaaggtagccagggccagcctggagtaccagggtctgtggggtta
cctggcctgccaggtccacaaggatctgttggactgaaaggatcagcaggagccaaagga
gaaatgggagtaatgggaactcccgggttgccagggactcctggaccaattggagatcga
gggttgcctggtgaaaaaggtagccaaggtttgaaaggcgtggttggaccacagggtgat
ccaggtgtcaaaggggataaaggtgaagctggtcttccgggaatacctggaagcatggac
accatggatatggttagtctcaaaggccaaaaaggagatcctggagaaaaaggggacctt
gggctaccaggagaaaaagggttacgtggggaatatggagaaccaggaattccaggaagg
gatggtgaacctggtactccaggacaaccaggaccaaaaggagatcagggtcccccaggg
tacccaggagatccaggaattccaggacaaaaaggatcagttggtgaaatgggtttgcca
ggaacacctggagaaaagggtctgcctggaataccaggttcaccaggcacaccagggttc
cctgggcaaaaaggtgaaaaaggagacaaaggagcagcaggttttcctggaattggcttt
ccaggatctcctggtgagaagggagaaccaggaagaacaggtagtccaggcttatctgga
gacaaaggtgaaaagggtaatgcaggaattccaggaatgccgggttctccaggtcccaaa
ggatcccctggcatggcaggatttccaggcaacccaggcctccatggagcaaagggtgaa
aaaggacttcctggcttaagtggcatcccaggtttaaaaggagaaccaggtgaacctggt
gttcctggtcctgctggtgccattggtcagaagggtgaaccaggctatgatgggattcca
ggcacagctggtgcaaagggtgaacaaggtgttccaggtagaggacttccaggatttcca
ggtgcaaagggagataaaggtgcgaaaggagaagtgggtttcccaggatccccaggaatc
ccagggattccaggcttaaaaggagaacaagggtatgctggcccaccaggccctaaaggc
aaccaaggtcttcctggactaccaggaagtgcaattgagggtcctaaaggagacagagga
ccccaaggccaacctggcctaccaggtttaccaggtccaacagggccaccaggacctcca
ggtctgaaaggggctaaaggagagcaggggagtgatggctggcctggaactcctggaggt
ccaggagataaaggcgatccaggtttccagggactgccaggtagtcctggtttgccagga
ggtgctggtgaaaagggtgatctagggcctccaggtgtcccaggtgttccaggtccaaaa
ggatctgcaggcttcccaggcctcaagggtgagcgaggtgaccaaggtcttcctggatct
aaaggtttacaaggcccaccgggccccccaggtgcttttcagcttatcaaaggggatcct
ggcttacctggcccagtaggaccagttggtctcaaaggattcccaggacttccaggtccc
aaaggacagcaaggagcaacaggaccttcaggtgtacctggaccacctggtagtccaggg
tttgatggcagacctgggcaaaaaggagaagttggtccttatggtcccccagggcccaga
ggaatccctggtccacctggccctgaaggtttacctggagctatgggcccaccaggtgca
gcatctgttgctcatggcttccttgttaccagacacagtcaaaccactgaagaaccacag
tgtccatttggaacaaggttgatttaccatggctactccctgctttacgtacaaggaaat
gaaagagcacatggccaagatctgggcaccgcagggagctgtctccgtaaatttagtact
atgcctttcttgttctgcaatatcaacaatgtatgtaactttgcgtcgaggaatgactat
tcctactggctgtccactcctgagcccatgccaatgagtatggcacctatcactggtgaa
agtatcagaccattcatcagcaggtgctctgtgtgtgaagctcctgctatggtaatcgct
gttcacagtcaaacaatccagataccaccatgtcctgaaggctggagttccctttggatt
ggttactcctttgtcatgcataccagtgctggtgctgagggctctggccaggccctggcg
tctcccggttcctgcctggaggagttccgcagcgctcccttcattgaatgccatggccgg
ggcacctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaat
gagatgttcaagaaaccgactccgtcgactttgaaagcaggggatctgcgctcaaacgtt
agccgttgtcaagtctgtatgagaaatacataa
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integrated database retrieval system
