Lagopus muta (rock ptarmigan): 125688433
Help
Entry
125688433 CDS
T09141
Symbol
SOX1
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125688433 (SOX1)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125688433 (SOX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
125688433
NCBI-ProteinID:
XP_048790521
LinkDB
All DBs
Position
1:138714632..138715751
Genome browser
AA seq
372 aa
AA seq
DB search
MYSMMMETDLHSPGGAPAPGGGLSGQSGAGGGGGGGGGGGKAGQDRVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR
KTKTLLKKDKYSLAGGLLGAGPAAGGPPAVGVGMGVGVSPGGVGQRLESPGGAAGGGYAH
MNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGGGGHPHHPHPHHPHHPHNPQPMHRY
DMGALQYSPISNSQGYVSASPSGYGALPYGSQPHQNSAAAAAAAAAAAAASSGALGALGS
LVKSEPSVSPPVTSHSRAPCPGDLREMISMYLPGGEGGDPAAAAAQSRLHSLPQHYQSAS
TGVNGTVPLTHI
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagacggacttgcactcgcccggcggagccccggcgcccggc
ggcggcctctcggggcagagcggcgcgggcggcggcggcggcggcggcggcggcgggggc
aaagcggggcaggaccgcgtgaagcgccccatgaacgccttcatggtgtggtcgcggggg
cagcggcggaagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgg
ctgggcgccgagtggaaggtgatgtcggaggccgagaagcggcctttcatcgacgaggcg
aagcggctgcgggcgctgcacatgaaggagcacccggattataaataccggcctcggcgg
aagaccaagacgctgctcaagaaggacaagtactcgctggccggagggctgctgggagcc
ggcccggccgcgggcggccctcccgccgtcggcgtgggcatgggcgtcggcgtgagcccc
ggcggcgtcgggcagcggctggagagccccggcggggcggcgggcggcggctacgcgcac
atgaacgggtgggccaacggcgcctacccgggctccgtggcggcggcggcggcggcggcg
gcgatgatgcaggaggcgcagctcgcctacgggcagcacccgggcggcggggggcatccg
caccacccgcacccgcaccatccacaccatccgcacaacccgcagcccatgcaccgctac
gacatgggcgcgctgcagtacagccccatctccaactcgcagggctacgtgagcgcctcg
ccctcgggctacggcgcgctgccctacggctcgcagccccaccagaactcggcggccgcg
gcggcggcggcggcggcggcggcggccgcctcgtcgggcgcgctgggcgcgctgggctcg
ctcgtcaagtcggagcccagcgtgagcccgcccgtcacctcgcactcgcgggccccgtgc
cccggggacctgcgggagatgatcagtatgtacttaccgggcggcgagggaggcgacccg
gcggccgccgccgcccagagccgcctgcactccctgccccagcactaccagagcgccagc
acgggggtcaacggtaccgtccccttgacgcacatctga
DBGET
integrated database retrieval system
