Lagopus muta (rock ptarmigan): 125688483
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Entry
125688483 CDS
T09141
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125688483 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmut01009
]
125688483 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmut04515
]
125688483 (PCDH9)
Protein phosphatases and associated proteins [BR:
lmut01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125688483 (PCDH9)
Cell adhesion molecules [BR:
lmut04515
]
Cadherins
Protocadherins
125688483 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
MAP17
EphA2_TM
V_ATPase_I
Big_9
RCR
7tm_3
DUF6249
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
125688483
NCBI-ProteinID:
XP_048790646
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All DBs
Position
1:157365226..158084214
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AA seq
1225 aa
AA seq
DB search
MDLREFYLLTALIACLRLDSAVAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSTTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RFFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPFSGVIKSNVSFDREQQSSYTFDVKAVDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NSKGLFRIDPVTGNITLEEKPTPNDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQSKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPTTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQALKFGDMP
KYLWEIWVPDKPWVSQRRVTFHLPDGSQESCSDSGLGDHEPVGGGTLISHPLPLVQPQDE
FYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLGPYQ
QPKSPMSTFASQKEWVKKDKLVNGHTLTRTWKEDSNRNQFSDRKQYGSSEGHFNTGNHMT
DIPLANLKSYKQASGAAESPKEHQL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggaattttacttgttgaccgctttgattgcctgtttaaggctggattct
gctgtagctcaagaacttatttacactattagagaggagctgcctgaaaatgtccccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacggggaccagtgcc
agccttgtctacagactggtgtctaaagcaggggatgcccctctggtcaaagtgtccagt
accactggggagatctttacaacatcaaacagaatagacagagaaaaactctgcgctggc
gcttcctatgcagaagaaaatgagtgtttctttgaacttgaagtggtgattcttcccaat
gacttttttaggctgatcaagataaaaataattgtgaaggatactaatgacaatgcacct
atgtttccatcccctgtcatcaatatctccataccagaaaacactctgatcaacagtcgc
tttccaatcccatcagcaacagatcctgatacaggtttcaacggtgtgcagcactacgag
ttgttgaatgggcagagtgtgtttggcctggatatcgtagaaactccagaaggagagaaa
tggcctcaattgattgtgcagcagaacttggatagagagcaaaaggacacctacgtgatg
aaaatcaaagtggaggatggaggtaccccacagaaatctagcacagctatcctgcaagtc
acagtaagtgatgtcaatgataacaggccagtttttaaagagagtcaagtagaggttcat
ataccagagaatgcgcctgtaggcacttctgtaattcagcttcatgctacagatgcagat
ataggaagcaatgcagaaatcagatatatttttggtgcccaagttgcgcctgcgaccaaa
agattttttgctttaaacaacaccacagggctgatcacagttcagaggtccttagatcgg
gaagagactgctattcacaaagtgacagtgctggctagtgatggcagctctacaccagct
cgggcaactgtgaccatcaatgtcactgatgtaaatgataaccctccgaacatagacctc
aggtacataataagtcccatcaatggcacagtgtacttatctgagaaagatcctgtcaat
acaaagattgccctaattacggtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaggtccccttccacctgaaggcagtttacgacaaccagtatttg
ttagagacctcttccttgttggactacgagggcaccaaagaattcagctttaaaattgtt
gcttctgattctggcaagcccagtttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccgattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccgtcgcggtctatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggccctaatgcctccttttttgatctggatcgaaag
acgggagttttgacagcctccagagtttttgacagagaagaacaggagcgtttcattttc
actgttacagcccgagacaatggcacccctcctttgcagagtcaagcagctgtaattgtt
actgtgttggatgaaaatgacaacagtcccaaatttactcataatcatttccagtttttt
gtatcagagaacctaccaaagtatagcactgtgggggtgatcacggtgactgatgcagat
gctggggaaaacaaagcggtgaccctttctattctcaatgacaatgacaactttgtgctg
gatcccttctctggagttataaagtccaatgtttcttttgatcgagaacagcagagctcc
tatacctttgatgtcaaggcagttgatggaggacaacctcctcgctcttctacagcaaaa
gtgaccataaatgtcatggatgttaatgataacagtcctgttgtcatctacccgccttct
aatacttcttttaagctggtgccactctcagcaattccaggatcagtggtagcagaagtg
tttgcagtggatatcgacactggaatgaacgctgaactgaagtacacaatagtgagtgga
aatagcaaaggtctgtttcggattgatccagtgacaggtaacatcactctggaggaaaag
ccaactcctaatgatgtggggctgcatcgcttagttgtcaacataagtgatttgggttat
cccaaatctttgcatactcttgtgcttgtttttttgtatgtaaatgatactgctggaaat
gcctcttatatttatgacttgatacgcaggactatggaaacgcctctggacaggaacata
ggagacagtagccaaccctaccaaaacgaggactatctcacaatcatgattgctattgtg
gcaggtgccatggttgtcatagtggtgatatttgtcactgttcttgttcgctgccggcat
gcatccagattcaaagccgcccagaggagcaaacaaggtgctgaatggatgtctcccaat
caggagaacaagcaaagcaagaaaaagaaaaggaagaaaaggaaatctccgaagagttct
cttttgaactttgtgaccattgaggagtccaaacctgatgatgcagttcatgaacccatc
aatgggacaataagccttccagcggagctggaggagcaaagtataggaagatttgattgg
ggcacagcaccaccaacaacctttaagcctaacagtcctgatcttgccaagcattacaaa
tctgcctctcctcagtctgcttttcatctcaaacctgacactcccgtttcagtgaaaaag
caccacgtgattcaggaactccctttggacaacacctttgttggtggctgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacaggcactgaaatttggagatatgccg
aagtacttgtgggagatttgggtacctgacaaaccatgggtgtcccagcgccgtgttact
tttcacctccccgatggctcccaggaaagctgcagtgacagtggtctgggagaccacgag
ccggtgggtggtggaaccctgatctcacaccctctccctctggttcagccgcaggatgag
ttctacgaccaggcctcaccagacaagaggactgaagctgatggcaactccgaccccaac
tcggatgggcctcttgggccaagaggattagctgaagcgacagagatgtgtactcaagaa
tgcctggttttgggtcattcagataattgttggatgcctcccagcctgggtccataccaa
cagccaaagtctcctatgtctacctttgcatctcagaaagaatgggttaagaaggacaaa
ttagttaatggacacacactgaccaggacctggaaagaagatagcaacagaaaccagttc
agtgatagaaagcagtatggttccagtgaaggccatttcaacactggcaatcacatgact
gatattcctctggccaacttgaagtcttataaacaggcctcaggagctgctgagagtcca
aaggagcaccagctataa
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integrated database retrieval system
