Lagopus muta (rock ptarmigan): 125689029
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Entry
125689029 CDS
T09141
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125689029 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125689029 (PNLDC1)
Enzymes [BR:
lmut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125689029 (PNLDC1)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125689029 (PNLDC1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125689029
NCBI-ProteinID:
XP_048791748
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All DBs
Position
2:64904110..64914870
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AA seq
532 aa
AA seq
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MDVGAADFARCLPSLRDRVGRAAFLGLDMEFTGLHSVFLQNNQPSLFDSPAERYQKVRQS
VQRFTITQLGLAIFSEENSNKYVVHSYNFFLFPSTLGVMDAEFTLSASSIQFLSHYGFDY
NKFLKDGIPYMNELQEKMLSQRLLEGSWKVCSAPNMNVVKKAIDEVTCWIAAAKEGDSMI
LQDLSDSQMLDVQLVLRQALPNVWTEPLGDNEVMVKKVSPQHRRLLESSSHDSCQKELIL
TSARGFTNLFQIIVKAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHLFPVLID
TKTVTKSIWKNYQFPRVSNLLEVYEVLCSSNLNPMDPSCPEIVLARDSVRYAEKAAPHEA
AYDAFLCGSVLLKAAHLLLCSLTDDAAKANSSFSQYLTMLAEYLNKVNVIRGGVSSINFS
GEDASCRYPPPLVVCVRGWPRLDERQIYQELQPLCRFDIRRLSENQFILLSNRFKHVIRV
LRDYKNHPKLQISVYRHWRHSPHVNCLLKVSGIVALWSLLAFVLGGSPSRSP
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggggcggcggacttcgcgcgctgcctgcccagcctgcgggaccgcgtcggc
cgcgccgctttcctgggcctggacatggagtttactggcctacattcagttttcctacaa
aataaccagcccagcttgtttgactccccagctgagcggtaccagaaggtcaggcagagt
gtgcagcgcttcaccatcacgcagctggggctagcaatattctcagaagaaaattcaaac
aagtatgtggtgcattcatacaatttctttctctttccatcaactttgggagttatggat
gctgaattcaccctttctgcatctagcattcaattcctgtctcactatggctttgactat
aataagttcctgaaagatggaatcccgtacatgaatgagttacaggagaagatgcttagc
cagcgtctcttagagggtagctggaaagtttgcagtgctccgaacatgaatgtggtgaag
aaggctattgatgaagtgacctgttggatagcagcagccaaggaaggggactcaatgatt
ctgcaggatctgagtgattctcagatgcttgatgttcaactggttctgcgacaagctctc
ccaaacgtttggacagagcctcttggagacaatgaggtaatggtgaaaaaagtgagtccg
cagcatcgtcgccttctggaaagctcttctcatgactcctgccagaaggagctcattctc
acatctgcccggggctttaccaaccttttccagataattgttaaagctaaaaagcctctg
gtgggacacaacatgctgatggacctctgtcatctccatgacaagttctacaaccccctg
ccagaaagctatgaggagtttaaaaagaatattcaccacctatttcctgtcctcatagac
accaagactgtaacaaaatccatctggaagaactatcagtttcctcgagtatctaatctt
ctggaggtgtatgaggttttgtgcagcagcaacttaaatcccatggatccatcgtgtcca
gagattgttcttgcaagggactctgtgcgatacgctgagaaggcggctcctcatgaggca
gcgtatgatgcatttctctgtggttcagttcttctgaaggcagctcatttgctgttgtgc
agcttgacagacgatgcagcgaaggccaattcttctttctctcagtatctcaccatgtta
gccgagtatttgaacaaggtgaatgtcatccgaggtggcgtctcaagcattaacttctct
ggggaagatgcttcctgccgatacccccctcccttggttgtctgtgttcgaggttggcca
cggctggatgaaaggcagatctaccaggagttgcagcctctttgtcgctttgatattaga
cggctttcagagaatcaattcattttgctctccaatagatttaagcatgtcattcgtgtt
ctgcgtgattacaaaaatcaccctaagctgcagatctctgtctatcgccactggaggcac
tctcctcatgtgaactgcctgttaaaagtctctggtattgtggcactttggtctctgttg
gcctttgtgcttggaggatctccttcccgttcaccataa
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