Lagopus muta (rock ptarmigan): 125689513
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Entry
125689513 CDS
T09141
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125689513 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125689513 (HBS1L)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125689513 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GIP1_N
Motif
Other DBs
NCBI-GeneID:
125689513
NCBI-ProteinID:
XP_048792692
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Position
2:complement(54762275..54826810)
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AA seq
687 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPATFAEPLEEEYG
YEDTEDTAGYFMPNHQLTEVDRARLSSCLDQMREVLAESVPDQAMEQAVLASKFDVQKAL
DLVLSQDSKQNVKTKDEDAVIVRKTTKGKSRDSRSARMESEIVPKITKMTVSGKKQSMGF
EVPCMITEENGHVNTPQKGLPVEEASVTPGVLEAVSKPALSPQVVQVSEEQNTMPTPVKK
TSKTKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKECDVAYIPTSGLGGENLVTRSQSSDLTKWYQGKCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPVKVCTRFRARILIFNIEIPVTKG
FPVLLHYQTVSEPATIRRLLSVLHKSTGEVTKKKPKFLSKGQNALIELETQRPVAVELYK
DFKELGRFMLRYGGSTIAAGVITEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgaggctacaactacgacgaagattttgaagatgatgat
gtgtatggccagtcagtagaagatgattattgcatttctccttctacagcagctcagttt
atctactcaagacgagacaaaccagcaacatttgctgagccactggaagaggaatatggc
tatgaggatacggaagatactgctggttattttatgcccaatcatcagttgactgaagtt
gatagagctcgtcttagttcatgccttgatcaaatgagagaagttttggcggagtctgta
ccagaccaagcaatggagcaagcagtactggctagtaaatttgatgtacagaaggctttg
gatcttgtgctttcacaagacagtaagcaaaacgtgaagaccaaggatgaggatgctgtg
attgtaagaaagacgacaaaaggaaaatcaagggattcccgatcagccagaatggaatct
gaaattgtaccaaaaattaccaaaatgacagtgtctggaaagaaacagtcgatgggattt
gaagttccatgtatgattactgaagaaaatggccatgttaacacacctcagaaaggactg
ccagttgaagaagccagtgtaactcctggggttcttgaggcagtatcaaaacctgctctt
tcaccccaagtagtgcaggtttcagaagagcagaataccatgcctactccagtaaaaaaa
acaagcaagacaaaaccacaaatagatgtgaaagcggaattggagaagagacaaggagga
aaacaactgcttaatttggtggtaataggacatgttgatgcaggtaaaagtactttaatg
ggtcacctactctacctcttgggaaatgtgaacaaaagaactatgcacaaatatgaacag
gagtctaagaaggctggcaaagcttcatttgcatatgcgtgggtcttggatgaaactggg
gaagaaagagaaaggggagtaacaatggatgtgggtatgaccaagtttgagacgaagact
aaagtaattactctgatggatgctccaggccacaaagactttattccaaatatgatcaca
ggagctgcacaggccgatgtggctattttggttgtggatgccagcagaggagaatttgaa
gcaggatttgagacaggtggacaaactcgagaacatggattattagtgcgctctcttgga
gtcacgcagctagctgttgcagtcaataaaatggaccaggtcaattggcaacaagaaaga
ttccaggaaattaccagtaagcttggccagtttcttaaacaagctggttttaaggaatgt
gatgtggcttatattccaacaagtggtcttggtggtgaaaatttagtcacgagaagtcag
tcaagtgacctcacaaaatggtatcaagggaagtgtttgttagagcaaattgattctttc
aagccaccgcaaagatcagtggacaaaccgttcagattgtgtgttgctgatgtttttaaa
gaccaaggatcaggattctgtgtgactggaaaaatagaagctggctatattcaagtggga
gaacgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacacttcac
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgttggctgtgtattttgtgatcccaaggaacctgttaaagtt
tgcactcgattcagagctcggattctgatcttcaatattgagattccagtcaccaaagga
ttccctgtgctgttacactatcaaacagtaagtgaacctgctactattagaagattgttg
agtgtcctgcacaaaagcactggtgaagtgacaaagaaaaaacctaagttcctttctaaa
ggacagaatgctttaatagaactagaaactcaaaggccagttgctgtagagttgtataaa
gattttaaagagcttgggaggtttatgttacgctatggtggttccactattgctgcagga
gttatcacagagattaaagaatga
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