Lagopus muta (rock ptarmigan): 125689647
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Entry
125689647 CDS
T09141
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125689647 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125689647 (MSH2)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125689647 (MSH2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
125689647
NCBI-ProteinID:
XP_048793056
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Position
2:100904433..100932166
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AA seq
942 aa
AA seq
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MAGGCSMAAEAPREAVWPEGAGAEAGFVRAVLSLLEKPDTTVRFFERGDYYSVHGADARL
AARELFRTRAVIRQLAGAPGNQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKS
VKENDWYLAYKGSPGNLAQFEEVLFANNDMSMAIGVVGVKLSSADGQRVIGVGYVDTTLR
KLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKAD
FTTKDIVQDLNRLLKSRKGEQMNSAALPEMEKQVAVSSLSAVIKFLELLSDDSNFGQFEL
TTFDLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLM
DKNRIEERLNLVEAFVADTELRQGLQEDLLRRFPDLNRLAKRFQRQAATLQDCYRMYQAI
NQLPNVVQALEKYEGAHQMLLLAVFITPLNDIHSDFSKFLEMIETTLDMDKVENHEFLVK
ASFDPNLTELREKMNELEENMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEK
VLRNNSKYKITDTQKNGVKFTNSKLSAINEDYIKNREEYEEAQDAIVKEIINIASGYAEP
IQTMNDVIAQLDAIVSFAHVSNAAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFI
PNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILAR
VGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIA
SKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVA
ELAAFPKHVIERAREKALELEEFQDIGRPKESEGEPAAKKCYREREEGEKIIQDFLCQVK
ALPLTDMSEEDIKTKLKQLRADVLAKNNSFVNEIISRTKVTP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggctgcagcatggcggccgaggcgccgcgggaagcggtgtggccggagggc
gcgggggccgaggcgggcttcgtgcgcgccgtgctctccctgctcgagaaaccggacacc
accgtgcgcttcttcgagcgcggcgactactactcggtccatggcgcggacgcgcggctg
gccgcccgcgagctgttccgtacgcgggccgtcatccggcagctggcgggcgcgccagga
aatcagaaactggagagtgttgtgctcagtaaaatgaactttgaatcttttgtgagagat
ttgctgctggttcgtcattacagagtggaagtttacaagaataaagcagggagtaaatct
gtcaaagagaacgactggtatttagcatacaagggttctccgggaaatcttgcccagttt
gaggaagttctctttgccaacaatgatatgtcaatggccatcggggttgtgggggtgaag
ctgtcttctgctgatggacaaagagtaataggagtagggtatgtggacactacgctgaga
aaactgagcgtctgtgagttcccagataacgatcagttctcaaaccttgaagccctgctg
gttcagctaggacctaaggagtgtgtgctgccaggaggagacactgcaggagagatgggg
aaactgcggcaggtcattcagagaggaggaatcctgattacagacagaaagaaggcagat
ttcacgacaaaggatattgttcaggatctcaatcgcttgttaaaatccagaaaaggagaa
caaatgaacagtgcagcattgccagagatggaaaagcaggttgctgtttcatctttgtca
gccgttatcaagtttttggagttgctgtcagatgactctaactttggacaattcgaactg
actacttttgatctcagtcagtatatggttctagacaatgcagctgtccaagcactcaac
ctgttccagagttctgtggaaaatgctaataatacacagtctctggctggtttactaaac
aaatgcagaacccctcaaggacaaagactggttaatcagtggatcaaacagccgcttatg
gacaagaatagaattgaagaaaggttgaacttggttgaagcctttgtggcagatactgaa
ctgcgtcagggccttcaagaagaccttctacgccgcttccctgatcttaaccggctagca
aagaggtttcagagacaagcagcaaccttacaggactgttaccggatgtatcaagctatt
aaccaactgcctaatgttgtccaagcactagaaaaatatgaaggagctcaccagatgttg
ttattggcagtgtttataacacctcttaatgacatccactccgacttctcaaaatttctg
gagatgatagaaacaacattggatatggataaggtggagaatcatgagttccttgtaaag
gcttcttttgatcccaacctgacagaattgcgagagaagatgaatgagctggaagaaaac
atgcagaccttattaaagagtgcagccaaagagcttggtttggaagctggtaaaagtatc
aaactggagtcaaattcacagtttggacaccactttcgaattacttgcaaggaggaaaag
gttctcaggaacaattcaaagtacaagataactgatacacagaagaatggtgtgaaattt
acaaacagcaagctgagtgccatcaatgaggattacataaagaacagagaagagtacgaa
gaggctcaggatgcaattgttaaggaaattattaacatcgcttcaggttatgcagagcca
atccagaccatgaatgatgtaatagctcagttagatgcaattgtcagttttgctcacgtg
tcaaatgcagccccagtgccgtatgttcgtcctgtcattctggaaaaggggcaaggaagg
attgtgctgaaaggtgccaggcacccttgcatcgaagtgcaagatgaggtggccttcatc
cccaatgatgttacatttgagaagggcaagcagatgttccacattattactggccctaac
atgggtggaaagtcaacatacatccgacagacaggagtcattgttcttatggcccaaatt
gggtgctttgtaccctgcgactctgcagaaataaccattgtggattgtatcctggctcgt
gtaggagctggagacagtcagctgaaaggtgtgtctactttcatggctgaaatgttggaa
acggcttccatccttaggacagcatctgaaaactctttgataattattgatgagctggga
agaggaacttcgacctacgatggctttggcttggcgtgggctatttcagaatacattgcg
agcaaaatttgtgctttctgtatgtttgccacacactttcatgaactgacagctcttgct
gatcaagttccaactgtaaataacctacatgttactgctctcaccagtgacgacacactg
acaatgctgtatcgtgtcaaggcaggtgtttgtgaccagagttttggaatacatgtagca
gagttggcagctttcccaaaacatgtgatagaaagggcaagagagaaagcactggagctg
gaggagtttcaagacattggcaggcccaaggaatctgaaggagagccagcagccaagaaa
tgctacagagaaagagaggaaggcgaaaagatcattcaggattttctctgtcaagtgaaa
gcattgcccctgacagatatgtcagaagaagacatcaaaaccaagctgaagcagctgaga
gctgatgtgttggcaaagaacaacagtttcgtgaatgaaatcatttccagaacaaaagtt
acaccatga
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