Lagopus muta (rock ptarmigan): 125690544
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Entry
125690544 CDS
T09141
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125690544
NCBI-ProteinID:
XP_048794913
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All DBs
Position
3:5476217..5702874
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AA seq
1626 aa
AA seq
DB search
MSVCPLHTHPLRIPSKPTAAECSRAEAECRHQAPSWCCCACTGCKNVHYDLVFILDASSS
VGKEDFEKVRQWVSNLVETFEIGPDKTRVGVVRYSDRPTTEFDLGKYKTREEIKEAARKI
RYYGGNTNTGDALRYINTYSFSKEAGGRLSDRTVKKVAILLTDGRSQDYVLDPANAARQA
GIRIFAVGVGEALKEELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVQV
EGDRFKHTNGDTDEIPGFDLMDSFSVKQIFGMKENGIQSSYVRLGSFPVVQKTEDVFPQG
LPDEYAFVTTFKFRKASRKEDWYIWQIIDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVR
VVFRSARVSDLFDRSWHKIALSIQSTAVSLYIDCKLVQMLPIEDRENIDIQGKTVIGKRL
YDSVPIDFDLQRMVIYCDSRHAELETCCDIPSGPCQVTVLTEAPPVEVRPTVGSEQVAHL
KTFNCSCPAGQKGERGSIGPEGPKGQKGESGSQGLPGPRGEKGESGRAYGRGEKGEKGEE
GSPGFPGLKGDKGEKGSLGLPGTPGKDGAKGEAGEPGQPGAFGLPGPAGPKGSEGKQGPP
GIKGYVGAPGLQGERGEKGTRGDKGERGLDGFPGKPGVEGKQGPAGSPGPPGGSGPKGEK
GEPGLPGLPGSSVPSEGLKGEQGEPGPRGPQGQPGLPGLPGEAGLEGKPGVPGLPGQRGK
KGEPGFPGINGLIGPQGPPGPPGIAGPPGPPGAPGLPGEIGVAGKSGLPGPAGSPGKDGL
NGLPGLPGQKGEQGEKGEEGFPGKAGPKGEPGSRGQPGEQGEAGLPGLQGLPGLRGEKGD
QGGKGKDGLPGLKGERGEKGDTGSPGPPGTPGTTAFFTPHPRIPGEPGPKGEKGDRGTSG
EPGLPGIPGEQGVPGAVGLQGTKGQKGARGEVGAPGEAGAVGPVGPPGPRGLPGNVGVPG
NPGLPGKEGERGEKGDPGKEGKVGLPGPAGVPGPPGQPGLPGKGKDGEQGERGPPGLPGP
FGHKGERGAPGLPGQPGDRGVPGVGLAGPPGPVGPPGDKGSLGPRGVPGIPGPQGPPGQD
GLPGNPGERGPPGKPGTSPLLSPEDINLLVKDVCTECPPGPPGLPGIPGFKGDKGLRGPP
GRDGQDGKMGNAGPRGPAGPPGLDGQKGAKGDRGITGDAGEKGEQGHPGMPGFAGAPGNP
GPPGPDGAPGPIGPAGNPGDMGKDGPPGPQGPPGVPGLPGIAGNDGKDGKPGSLGEPGKP
GEPGLPGQEGARGLPGFKGQRGDTGPPGPRGEPGATGPAGREGPPGKDGDTGPIGPQGPR
GLRGQPGKNGLPGSAGEPGPAGNPGPKGNKGENGSPGLPGFIGPRGPPGDPGEKGPPGKE
GAPGKPGDPGSKGERGEPGIKGEKGPPGEKGPPGEPGIPGHKGHPGLMGPHGPPGDSGQV
GPPGPPGQPGFPGPRGEPPSLETLRRLIQEELAKQLDAKLAYLLAQIPPAHVKASHGRPG
PPGPPGKEGLPGRTGPPGEPGRPGQTGSEGPPGPIGPKGERGAKGEKGDAGIGQRGEIGP
PGIPGLPGEPGYAKDGIPGPPGPQGEAGVPGLMGPQGPPGANGQCDPAQCAYYASLAARP
ANVKGP
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgtgtcccctgcacacccacccactacgcatcccatccaagccgacagctgca
gagtgcagcagggctgaggctgagtgcaggcaccaggctccctcctggtgctgttgtgct
tgcacaggttgcaagaatgttcattatgaccttgttttcatcttggacgcctcctccagt
gtcggaaaagaagattttgagaaggttcgacagtgggtgtctaacttggtggaaactttt
gagattggtcctgacaaaacccgtgtcggtgtggtgcgatacagtgacaggccaaccact
gagtttgacctgggaaagtacaaaacccgtgaggaaatcaaagaggccgcccgaaaaatt
aggtattacgggggtaatacaaacactggagatgctctcaggtacatcaatacttacagt
ttttccaaagaggcaggtgggagacttagtgatcgaactgttaaaaaagtggctatcctt
ctgactgacggaaggagccaagattatgtcttggatcctgccaatgcagctcgtcaggct
ggaatcaggatctttgctgtgggtgtcggtgaagccttaaaagaagaattggatgagatt
gcttcagaaccaaagtctgctcatgtgtttcatgtctctgattacaatgccattgataaa
attcgggggaagctgagaagacgtctctgtgaaaatgttctgtgtccaaatgttcaagtg
gaaggagatcgattcaagcacactaatggggatacagatgagattccagggtttgacctg
atggattcgttcagtgtgaaacagatctttggaatgaaagaaaatggaattcaaagctct
tatgtacgacttggaagtttccctgttgttcagaaaactgaggatgtattcccacaaggt
ctgcctgatgaatatgcctttgtaactaccttcaaattccgaaaggcttccagaaaagaa
gactggtatatttggcagattattgacaagtatggcataccacaggtttcaatccgactg
gatggagagaacaaagctgtggagtacaatgctgtggggcttaccaaggatgctgtgaga
gtggtctttcgaagtgcacgagtcagtgatctttttgatcgcagctggcacaaaattgcc
ctcagcattcagtcaacagctgtctcgctgtacatagactgcaagcttgtgcagatgctg
cctattgaagatagggaaaatatcgacattcaaggaaagactgtgattggcaaacgcttg
tatgatagtgtccccattgattttgatcttcagcggatggttatttactgtgattctcgg
catgctgagctggagacctgctgtgacattccttcaggaccatgccaggtcacagtcctg
acagaagcacctcccgtggaagtgaggcctactgttggcagtgagcaagttgcccacctc
aagactttcaattgctcctgtcctgctggacaaaagggggagagaggctcaattggccct
gaaggtcctaaaggtcaaaagggagaaagtggcagccaagggcttcctggacccagagga
gaaaaaggagagtccggcagagcctatggcagaggagaaaaaggagaaaagggtgaagaa
ggatcccctggatttcctggactgaagggtgataaaggagaaaaagggtcccttggcttg
cctggcaccccggggaaggatggagcaaaaggagaagccggcgaaccaggacaaccagga
gcatttggattgcctgggccagcaggtccaaagggatctgagggaaaacagggtcccccg
ggtattaaaggctacgtaggagcaccgggtttacaaggagaaagaggagaaaagggaaca
cgaggagacaagggagaacgaggtttagatgggttcccaggaaagccaggtgtggaagga
aaacagggtcctgctggcagcccaggccctccaggtggcagtgggcccaaaggagaaaag
ggtgaaccagggctccccggattgccagggtcttcagtaccttctgaaggcctgaaagga
gagcaaggagagcctggcccacgaggacctcaaggccaacctggacttcctggactccca
ggagaggctggtctagagggcaagcctggagtcccaggtttaccaggtcaaaggggtaag
aagggagaacctggattcccaggaattaatggtctgattggccctcagggacctccaggg
cccccaggcattgctggaccccctggaccacctggagcaccaggactgccaggagaaatt
ggtgttgctggtaaaagtggactgccaggaccagctggctcacctggcaaagatggatta
aatggtcttcctgggcttccaggtcaaaagggagaacaaggggaaaagggtgaggaaggc
tttcctggaaaagctggccctaagggtgaaccaggaagccgtggccaacctggtgaacag
ggtgaagcgggtcttcctggtcttcaaggtttacctggactgagaggagaaaaaggagac
cagggaggaaagggaaaagatggtctcccaggactgaaaggggaaaggggagaaaagggt
gacacaggttcccctggcccaccaggcacacctggaacaacagccttcttcaccccacac
cctaggattcctggtgaaccaggaccaaaaggggagaaaggagatcggggaacaagtgga
gaacctggattaccagggatcccaggtgaacagggtgtcccaggagctgtaggactccag
gggacaaaggggcagaaaggagcccgaggagaagttggagcccctggagaggctggtgca
gttggaccagtggggcctcctggaccaagaggattgccgggaaatgtgggagtacctgga
aaccctggactaccagggaaggagggagaaagaggggaaaagggtgacccaggaaaagaa
ggaaaagtgggtttacctgggccagctggggtgccagggcctcctggacagccgggtttg
cctggcaaaggtaaagatggagaacagggagaaagaggcccaccaggcttgccaggacct
tttggacataagggtgagaggggagctcctggcctccctggacagccaggagacagaggt
gtgccaggagttggactggctggaccacctggccctgttggacctccaggagacaaagga
tcattgggtcctcgtggtgtacctggtatccctggaccacaggggcctcctggccaggat
ggtctacctggaaatccaggggaaagaggacctcctggaaaaccaggtacctcacccctg
ctctctccagaggacataaatctcttagtgaaggatgtgtgcactgaatgcccgcctggc
ccaccaggactgccaggcatcccaggtttcaaaggtgacaaaggtctccgaggaccacca
ggtagagacggtcaggatgggaaaatgggaaatgctggtcccagaggtcctgcaggccca
cctggactggatggacaaaagggtgctaaaggagaccgtggaataactggggatgcagga
gaaaaaggcgaacagggacaccctggaatgcctggctttgcaggggctcctggaaaccct
ggcccacctggaccggatggggcaccaggaccaataggaccagcaggaaatccaggagac
atgggtaaagatggccctccaggtccacaaggcccaccaggcgttcctggacttcccggc
attgctgggaatgatggcaaagatggcaagccaggatctcttggagagccgggaaaacct
ggagaaccaggcctcccaggtcaggagggtgccagaggcttaccgggtttcaaaggacag
aggggagatacaggtcccccaggtccacggggggaaccaggtgcgacaggtcctgctggg
cgtgaggggccaccagggaaggacggtgatactggccccataggaccacagggccctcga
gggctcagagggcagccgggcaagaatggattgcctggatctgcaggagaacctggccca
gcaggtaacccaggtcctaaaggaaataaaggagaaaatggcagcccaggactccctggc
ttcataggaccccgaggaccacctggtgatccaggagaaaaaggccctccaggaaaggag
ggtgcaccagggaaaccaggtgaccctggatccaaaggagagaggggagagcctggcatc
aaaggtgaaaaaggtcctccaggagaaaagggccctccaggtgagcctgggatacctggt
cataaaggccatccaggtctgatgggaccccacggaccaccaggagacagtgggcaagtt
ggacctcctggtcccccaggacagccaggatttccaggaccacggggggaacctccgtct
ctagagactctgagaagactcatccaagaggagttagctaagcagctagatgcaaagtta
gcctacctcttggctcagataccgcctgcacatgtgaaagcatcccatggcagaccagga
cctcctggtccccctgggaaagaaggactaccaggaagaactggccctccaggagagcct
ggacgacctgggcagactggatctgaaggaccacctggacccattggacccaagggagaa
agaggagcaaagggtgagaaaggagatgctggcattggccagagaggtgaaataggtcct
ccaggaattccaggcctcccaggagagcctggctatgccaaagatgggataccaggacca
cctggccctcaaggtgaagctggggtacctggtctcatgggcccacagggacctccagga
gccaatggacagtgtgaccctgctcaatgtgcttactatgcaagcctggctgccaggcct
gccaatgtcaaagggccctag
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integrated database retrieval system
