Lagopus muta (rock ptarmigan): 125691121
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Entry
125691121 CDS
T09141
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lmut03016
]
125691121 (CDKAL1)
Enzymes [BR:
lmut01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
125691121 (CDKAL1)
Transfer RNA biogenesis [BR:
lmut03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
125691121 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Styelin
Motif
Other DBs
NCBI-GeneID:
125691121
NCBI-ProteinID:
XP_048796057
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All DBs
Position
3:87605290..87966637
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AA seq
581 aa
AA seq
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MPAACDSVLEDIEDIVLAQDSKPHDWRYARKNVFPKVRKRSWKQGTQTDDDPPCDSVIPG
IQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNS
IKKAQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK
KNNGKRLGGARLDLPKIRRNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA
KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIPEGAMLRLGMTNPPYILEHL
EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDI
ICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKRRTKDLSQ
LFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPMLMGKMVEVSIYEA
GKHFMKGQPVSDARVYAASITRPLAKGEVSGLTEEFRHARNGTKWKAHPSAEIPVKAALI
PWMALHLPWHQEGRGLKILSVSLALLAFLAMVYYGGVKREL
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgcctgtgactcagtgctggaagatattgaagatattgtgttggcacaagat
tcgaagccccatgattggcgatatgcaagaaagaatgtttttcccaaagtgcgaaagcgc
agttggaagcaaggaactcagacagatgatgatcctccatgtgacagtgtgattcctggt
attcagaaaatctggattcgtacgtggggatgttctcacaataattcagatggtgaatac
atggcgggacagctagctgcatatggatacaaaattacagataactctgctgaagcagat
ttatggttgctgaacagctgtacagtaaaaaatccagctgaagaccacttcagaaactca
atcaagaaagcccaagaggcgaacaagaaagtggttctagcaggctgtgttccacaggcc
caacctcgtcaggattacctcaaaggcttgagtattataggggttcagcagatagatcgt
gtagtagaagttgtggaggaaactattaaaggtcattctgtgagactgcttggtcagaaa
aagaacaatggaaaacgtttggggggagcacgactggatttaccaaagatcaggaggaat
ccacttatagaaatcatttccatcaacacagggtgtctcaatgcatgtacttactgcaaa
accaagcatgccagaggagatctagcaagctatcccatcgaagaactagtggatagagcc
aaacagtcttttcaagagggtgtttgtgagatatggctgaccagtgaagacacaggggct
tatggcagagacattggcacagacctccctacacttctgtggaagctggtcgaagctatt
cctgagggagctatgctgaggcttggcatgacaaatcctccctatattttagagcatctg
gaggaaatggcaaagattctcaatcatcccagagtgtatgcttttctgcacataccagtc
cagtccgcttctgacagtgtgctcatggacatgaaaagagaatactgcgtggcagacttc
agacgagtagtggatttccttaaagaaaaagtgcctgggataacaattgctacagacatc
atctgtggttttccaggagagacagatgaagattttcaagaaactatgaaacttgtagaa
cagtataagtttccaagcttatttattaatcaattttacccacgcccaggaactcctgct
gcaaaaatgcatcaagttccagctgcggtgaaaaaacgaagaacaaaggatctgtcccag
ctgtttcattcatacaatccatatgatcataaggttggagaaaggcagagggttctggtg
acagaagaatcctttgattccaactactatgttgctcacaatccattctatgagcaggtt
ctggtgccaaaggatcctatgttaatgggtaaaatggtagaagtgagtatttatgaagct
gggaaacattttatgaaggggcagcctgtgtcagatgccagagtttatgctgcatccatc
acgagaccattagcaaaaggagaagtttctggtttaacagaggagttcaggcatgcacgg
aatggcacaaagtggaaagcacatccgtctgctgagatcccagtgaaagcagcactcatc
ccctggatggctttgcatctcccatggcaccaagaaggaagaggactgaagatactgtct
gtcagcctggctctactggcatttcttgctatggtttactatggaggagttaaaagagaa
ctgtga
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