Lagopus muta (rock ptarmigan): 125691141
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Entry
125691141 CDS
T09141
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1 isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lmut04040
]
125691141 (TRPA1)
Ion channels [BR:
lmut04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125691141 (TRPA1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
PKD_channel
DUF5685
Motif
Other DBs
NCBI-GeneID:
125691141
NCBI-ProteinID:
XP_048796097
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Position
3:31904981..31937090
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AA seq
1126 aa
AA seq
DB search
MKRSLWRLCQSREKAAASSAYQGVVCEADAASVASQDVFKVISDGSACRLRSFIKKNRSG
LTKVDELNATPLHHAAEGGQIELMQLIIEDSSSEVLNVMDASGNTPLHWATRKNQVESVS
LLLSRGANPNILNSNMMAPLHMAIQSLHNEIVKILVQHSSTDVNLEGEAGNTPIMVACHK
DNPEALILLIENGGKICKPNKTGCMPIHAAAFSGAKTCMEILLKKGEELGHSAKTHINFT
NNGKCSPLHLAVQSGDLEMIKMCIEFGAQIDLKQNEKCTALHFAATQGATEIVKLMMSSY
AGDESIIDAVDGNKETLLHRTALFDHYELADYLISMGANIDSVDTEGRSPLLLATSCASW
KIVNLLLSKGANVSLKDHLGRNFLHLTVLQPGGLQHLNEKFLQMEHIKNLVVDEDNEGCT
PLHYACRQGVALSVNNLLSLNVSIYSKSRDKKSPLHFAASYGRINTCQRLIRDMKDTRLL
NEGDKKGMTPLHLAAQNGHEKVVQFLLKRGALFLCDYKGWTALHHAAFGGYTRTMQIILD
TNVKCTDRVDEEGNTALHLAAKEGHAKAVRLLLDYGAKILLNKAVASFFHEAIHNRRKDV
VSAVILHKRWEEAVLTFSHYSSANKCPLLEMIEYLPDSFKLVLDNCIIESSEEKTSRDFY
IEYNFRYLQCPLTLNKKLKESEDIFYEPLAILNAMVRHNRMELLSHPVCKEYLLMKWMAY
GFRAHLMNLGIYSLGLIPLTLLVTHIQPGRSLNGTEIYEARPLEYEDSYFTRVCMCLVLI
MSLLGICKEIFQLIQQKLKYLLDYSNLLDWTIYSTSIIFVSSLFINTPAHLQWECGAIAV
YLSWMNFLLYLQRFENYGIYVVMFWEILRTLIRIAVVFFFLILAFGLSFFVLLGSQQTYS
TPLLSVMKTFAMMLGDINYHDAFLDPLLSNELPYPFLSYTVLIIFTLLIPILLMNLLIGL
AVGDIAEVQKYAALKRIAMQVNLHTNLEKKLPFWFLSRVDQESITVYPNRPRYCGFMSVF
QYCFGCEDSTTDAQSTDTTLELEVLKQKYRLKDISTLLEKQHDLIKLIIQKMEIVSEAED
EDSNDLFQHKFRKRQLEHRNSKWDTVLKAVKSNVPNPSAEKNSTFL
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctctctgtggcggctgtgccagtcgcgggagaaggcggccgcgtccagcgcc
taccagggcgtcgtctgcgaggccgatgccgcttccgtcgcctctcaggatgtcttcaag
gtgatttcagatggaagtgcctgtaggctgcgaagcttcattaagaagaaccgttccggt
ctcaccaaagtggatgaattaaatgcaaccccactgcatcatgctgctgaaggaggccaa
atagaattaatgcagttgattatagaagattcttcctctgaagtattaaatgtgatggat
gcttctggaaataccccactacactgggctacaaggaaaaaccaggttgaaagtgttagt
ttacttctcagtagaggagccaacccaaacattctcaactccaatatgatggcacctttg
catatggctatacagtccctgcataatgaaattgtcaagattttggtccagcatagcagt
acagatgttaatttggaaggtgaagcaggaaacacacctataatggtagcatgtcataag
gacaatcctgaagcactaatactcctgattgaaaatggaggaaaaatatgtaaaccaaac
aaaacggggtgcatgcctatccatgctgctgcattttcaggagcgaaaacatgtatggaa
atccttttaaaaaaaggtgaagaattgggtcactctgctaaaactcacattaattttacc
aataatgggaagtgcagtccacttcatttggcagttcaaagtggagacttggaaatgata
aaaatgtgcattgaatttggagcccaaattgatcttaaacagaatgaaaaatgcactgca
cttcattttgctgccactcaaggagcaactgaaattgtaaagttaatgatgtcatcctat
gctggtgatgaatccattattgatgctgtagatgggaataaggaaacattgcttcacagg
acggccttgtttgatcattatgaactggcagactacttgatttcaatgggagcaaatatt
gatagtgttgacacagaaggtcgatctccacttctgttggccacttcttgtgcatcatgg
aaaattgtgaatttactgctctcaaaaggagcaaatgtatcgttaaaagatcatcttggt
cggaatttcttgcacttgacggtattacagcctggaggattacaacatctgaatgagaaa
tttctgcagatggagcatattaaaaatctcgtggtggatgaagataacgaaggatgcact
ccactgcattatgcatgcagacaaggtgtggccctctctgtaaataatttactcagcctc
aatgtttccatttattcgaagagcagagacaagaagtcaccattacactttgctgccagt
tatggccgcatcaatacatgccaacgacttataagggatatgaaagacacaaggctttta
aatgaaggtgataagaagggaatgactccccttcatttggcagcccagaatggtcatgag
aaggtcgttcagtttcttctgaaaagaggggccctttttctctgtgactataaaggctgg
acagccctgcatcatgctgcctttggaggatacactcgcacaatgcagataatattggat
actaatgtgaagtgtactgacagagtggatgaggaagggaacacagctttgcacctagct
gcaaaagaagggcatgcaaaagcagtaaggttacttcttgactatggtgcaaaaattctg
ttgaacaaagcagtagcttcttttttccacgaagcaatacacaacagaaggaaagatgta
gtgtcagctgtcattttgcataaaagatgggaagaagctgttctgacattctctcactat
tctagtgccaataaatgtcctttactggaaatgattgagtatcttcctgattcatttaaa
cttgttttggacaactgcataattgagtcttcagaggaaaagacaagtcgagatttctat
attgaatacaacttcagatatcttcagtgtcccctgacacttaacaagaaattaaaggaa
agtgaagacattttctatgaaccgcttgccattttaaatgccatggtacggcacaatcgc
atggagctacttagtcatcccgtgtgcaaagaatatttgctaatgaagtggatggcttat
ggttttcgagcgcatctaatgaatttaggcatttattctcttggtttgataccattgact
cttctggtcacccacatacagccaggaagatctttgaatgggacagaaatctatgaagct
agaccattagaatatgaggactcatacttcacaagagtgtgtatgtgtttagttttaatt
atgagtttactgggaatttgcaaagaaatatttcagctcattcagcagaaattgaaatat
ttgttggattactccaatctattggactggacaatttatagtacaagcataattttcgtg
tcttctttatttattaacacaccagctcatttgcagtgggaatgtggagcaattgctgta
tacttgtcttggatgaacttcttgctttatcttcagcgatttgaaaattatggcatttac
gttgtgatgttctgggaaattctgaggactttgattcggatcgcggtcgttttctttttc
ctgatattggcctttggactgagtttctttgtccttttgggttctcagcaaacatacagc
acgccactgctttctgtaatgaaaacatttgcaatgatgctgggagacataaattatcac
gatgcattccttgatccattactgagcaatgaattgccatatccgttcctgagttacaca
gttctgatcatatttactttgcttattccaatccttcttatgaacttgctaattggtttg
gctgttggggacatagctgaagtgcaaaaatatgctgccctcaaaaggattgcaatgcag
gttaatcttcacacaaacttagagaagaagctgccattttggttcctaagtcgagtggac
caggaatcaatcacagtctatcctaacagaccacgatactgtggatttatgagtgtattc
cagtattgctttgggtgtgaggactctaccacagatgcacagagcactgatacaacatta
gaattggaagttctgaagcagaaatacaggctcaaagatatatcgacgctgttggaaaag
caacacgacctcattaaactgattatacaaaaaatggagatagtgtcagaggctgaggat
gaagacagcaatgatttatttcagcacaagtttaggaaaaggcagttagaacataggaat
agtaaatgggatacagtgttaaaagctgttaaatcaaatgtgcctaacccaagcgcagaa
aagaacagcaccttcttgtag
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