Lagopus muta (rock ptarmigan): 125691388
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Entry
125691388 CDS
T09141
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lmut00535
]
125691388 (COL15A1)
Proteoglycans [BR:
lmut00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125691388 (COL15A1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
125691388
NCBI-ProteinID:
XP_048796667
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All DBs
Position
3:complement(90926410..91037429)
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AA seq
1130 aa
AA seq
DB search
MLSCRAWWSWNVLLLFLGLSVHACSAAQVIEERGSKEHLDLTELIGVPLPPSVYFVTGYG
GFPAYSFGTDANIGRLTSAIIPLPFYRDFAIVVTVKPNSDRGGVLFAITDAFQKTIYLGI
RLSPVDESTQRIIMYYTEPGSSISREAASFKVPVMTNRWNRFTVTVQGNSIALFMDCEEY
QRVQFQRSDRALVFESGSGIFVGNAGATGLEKFTGSIQHLTIRSDPRATEDHCEDDDPAA
SGDISGNGSVQEYEDITETQEELVPSHLLMRPEDSLAEAVEAPPTILSYLKENDFSGRHR
EEETSEPAKIKEQDSAVVETGQSNRESTAVMQKILREEDGSGASVLLGGSREKIRLKPEE
LGSGYADRETEILRGSPGSHGLPGKPAPDSHVGHPESSGEDGSAVELSPEGPQGLPGLDG
VVGPPGQKGEKGDRGLPGSVGAKGDSGVTGSIGPKGEAGVDGSPGKPGPPGPPGPPGPPG
PPGPTGRRPSTEGKPGIAGHPGGVGPKGEKGDPGPQGEPGQDGNNIVGPPGPPGPPGPVI
AIPELLLNDTEGILNFTTIEKLLGPPGPDGKPGLPGFPGPRGPKGDIGLPGLKGPKGQQG
EKGESGVIIAADGSLTELLGRKGQKGEAGVVGPMGPMGPIGPAGPKGELGFPGRPGRPGL
NGLKGVKGERGEALNGIPGLPGPPGPPGPPGHVVHIKGAVFPVSPRPHCKNAVSNIYPGN
QNVLNVHGAKGNGDCWSLHSSVDLKGEKGNRGAPGPPGPPLPPSYFSHFINSIKGEKGDN
GEKGEKGEPNGGFYLTGPPGPPGRPGLVGPKGDSVVGPRGPPGLPGLPGLPGYGKIGPPG
PPGPPGPPAIYGSAATMPGPPGPPGEPGSPVTRNLVTTFQNIDSMLEKVHLVTEGTLIYL
RETSDVFIRVQNGWRKLQLSELIPVPDESLPPPAVSSYGFQSLPVPNPISNMNNRKPALH
LVALNLPFSGDMRADFHCFQQAQQAGLMTTYRAFLSSHLQDLVTVVRKTDRYNLPVVNLK
GETLFNNWESIFNGNGGQFNIHVPIYSFDGRNVMTDPFWPQKIIWHGSTTNGIRMVSNYC
EAWHTADLAAMGQASPLKMGKLLDQKAYSCNNQFIVLCIENSFVSDPQGK
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcatgtcgtgcctggtggagctggaatgtgctgctactgttcttaggcttgtcg
gtccatgcttgttcagcagctcaggtcatagaagaacgaggctcaaaagaacatcttgat
ctcacagagttaataggagttccactccctccttctgtctactttgtcactggctacgga
ggttttccagcgtatagctttggtacagatgccaacattggtcgattgacaagtgctata
ataccattgcctttctatagagattttgcaattgtagttacagtgaaaccaaacagtgat
cgtggaggagtgctatttgcaataacagatgccttccagaaaactatttacttgggaatt
agactttcaccagttgatgagagcacccagagaataattatgtattataccgagcctggc
tctagtatctcccgagaagcggcttcatttaaagtgccagtgatgactaataggtggaat
agatttacagtgactgttcagggaaatagcattgctttgttcatggactgtgaagagtat
cagagagttcagtttcagaggtcggatcgagccttggtatttgagtctggctctgggata
tttgttggtaatgcaggagccacaggcctggaaaagttcacaggttcaattcaacatctg
acaatcagatctgacccaagagccactgaagatcattgtgaagatgatgatccagctgct
tcgggggatatcagtggcaatggcagcgttcaagaatatgaagacattactgagacacaa
gaagaactcgtgccttctcaccttctcatgaggcctgaagactcactggctgaggcagtg
gaagcacctccaaccatattatcttatttgaaagaaaatgatttctcaggacgtcacaga
gaagaagaaacctctgaaccagctaaaattaaagaacaagactcggctgttgtggaaact
ggacaaagcaacagagaatctacagctgtcatgcagaaaatcttaagagaagaagatggc
tctggtgctagtgtcttgctaggagggagcagagaaaagattagactgaaacctgaagaa
ctgggttctggatatgctgatagagagactgagattttaagaggcagcccaggatcgcat
ggccttccaggaaaaccagcccctgattcacatgtagggcatcctgagtcatcaggggaa
gacggatccgctgttgaactgagccctgaaggtccgcaaggtcttcctggacttgatgga
gtggttggcccaccaggacagaagggagaaaagggtgatagaggtcttcctggttctgtt
ggtgcaaagggtgacagtggggtcactggatcaataggccctaaaggagaagctggtgtt
gatggttctcctgggaaacctgggccccctggacctcctggaccccctgggccccctgga
cctcctggacccacaggtagaaggccaagtacagaaggaaaacctggcatcgctggacat
cctggaggtgtgggtccaaaaggggagaagggtgacccaggacctcagggtgaaccagga
caggatgggaacaatattgtgggtccacctggaccaccaggaccaccaggaccagtcata
gccataccagagctacttctcaatgatacagaaggaattcttaacttcactacaattgaa
aaactgcttgggcctcctggaccagatggtaagccaggtttaccaggatttcctggccca
cggggaccaaagggtgatattggtttgccaggattgaaaggacccaaaggccaacagggt
gaaaaaggagaatctggagttatcattgctgctgatgggtctttaactgaattgttggga
agaaaagggcagaagggtgaagctggagtggtaggaccaatgggaccaatgggaccaata
ggacctgctggacctaaaggagaacttggtttcccaggacgcccaggccgcccaggactg
aatgggctgaaaggtgtgaaaggtgaacgaggagaagcattaaatggcattcctggtttg
cctgggccccctggaccccccggacctccaggacatgtagttcacatcaaaggagcagtt
ttcccagtctctcctagacctcattgcaagaatgcagtgagcaatatttaccctggaaat
caaaatgttcttaatgtccatggggctaagggaaatggagattgctggagtctgcacagt
tcagtggacttaaaaggagaaaagggaaacagaggtgctccaggaccaccaggtccacct
ctgcctccatcatatttcagccactttattaatagcataaagggtgaaaaaggagacaat
ggtgaaaaaggagaaaaaggagaaccaaatggaggtttttacctgacaggaccacctgga
ccacctggaagaccaggattagttggacctaaaggggattcagttgttggacccagagga
cctccagggttgcctggcttacctggtttaccaggttatggaaaaattggaccccctggc
ccaccaggcccaccaggaccccctgcaatatatggatcagcagccacaatgcctggacca
ccaggtcctcctggagaaccagggtcacctgtaaccaggaatctggttacaacatttcaa
aacattgacagtatgttggaaaaggttcatttggtaacagaaggtacactaatctatctt
agagaaaccagcgatgtttttatccgtgttcaaaatggatggagaaaattgcagctaagt
gagctaattcctgtccctgatgaaagccttcctcctccagctgtatcaagttatggattt
cagtctcttccggtcccgaatccgatatcaaacatgaacaacagaaaaccagcactgcac
ctggtggctttaaacttaccattttctggtgacatgagagcagattttcactgtttccaa
caggcccagcaagcaggtttgatgactacctatagggcctttctctcatcacatttgcaa
gatctggtcacggttgtcagaaaaacagaccgatacaatttgccagtagtcaatcttaag
ggagaaacacttttcaacaactgggaatctatatttaatggaaatggtggacaattcaac
attcacgttccaatatactcctttgatggtaggaacgtcatgacagatccattctggcct
caaaaaataatatggcatggttcaactacaaatgggatccgaatggtcagcaactactgt
gaagcctggcacacagctgatttggcagctatgggacaagcatcaccactgaaaatggga
aaacttcttgatcagaaagcatatagctgtaataatcagtttattgttctctgtattgaa
aacagttttgtatctgatccccagggaaaataa
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