Lagopus muta (rock ptarmigan): 125691832
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Entry
125691832 CDS
T09141
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04140
Autophagy - animal
lmut04148
Efferocytosis
lmut05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125691832 (VPS16)
04148 Efferocytosis
125691832 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125691832 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lmut04131
]
125691832 (VPS16)
Membrane trafficking [BR:
lmut04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125691832 (VPS16)
Hops complex
125691832 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF3939
Motif
Other DBs
NCBI-GeneID:
125691832
NCBI-ProteinID:
XP_048797677
LinkDB
All DBs
Position
4:70781484..70790495
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AA seq
838 aa
AA seq
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MDCYTANWNPLGEEAFYRKFELYTMEWGLKEELRDCLVAAAPYGGPIALLKNNARKEKSP
SARPLLEIYSASGLLLASVPWKSGQLVQLGWTASEDLLCIQEDGTVLIYNLFCEFKRHFS
MGNEVLQNHVLEAKVFHTEYGTGVAILTGAHRFSLTTNIDDLKLRRMPEVPGLQKPPSCW
AVLTQDRVTVVLLAVGPDLYLLDNTSCSVVTPPGMSPSAGAYLQMAVSFNYRCLALFTDT
GYLWMGLATLKDKLCEFNSTIRSAPKQMVWCTRPRSRQRAVVLAWDRQLMVAGNSTECIR
FVLDEDSYLVPEPDGVRILSRTSHEFLHEIPEASQEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIKDQKLLPEAVSQCIEAAGYEHEPETQKSLLRAASFGKCFIDKFPPESFVR
MCQDLRVLNSIRDYQIGIPLTFTQYKRLTIEVLLDRLVLRRLYPLAIRICEYLRLPEIQG
VSRILAHWACYKVQQKDKSDEEVAYAINQKLGDTPGISYSEIAARAYDCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQNQPVA
LSLYRQFCKHQERETLKDLYNQDDNHQELGNFHVHSSYSEKRIEGRVGALQNAVDEYYKA
KNEFAAKATEDQIKLLRLQRHLQEDFDKPYLDLSLHNTVSTLIQDGHHKKAEQLYREFKI
PDKRYWWLKISALATRGDWEEMEKFSKSKKSPIGYLPFVEIAVKHHNRYEAKKYAPRVTP
EQRVKAFILVGDLEQAADAAIEHKNEAEMNLVLSKCSAATDSAVMEKLNRARAQLLKK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggccaactggaacccgctgggcgaagaggccttctaccgcaagttc
gagctgtacaccatggagtggggcctgaaggaggagctgcgggactgcttggtggcagct
gccccgtacggcgggcccatagctctgctgaagaacaacgccaggaaggagaaatccccc
agcgcccgcccgctgctggagatctactcggcctcggggctgctcctggccagcgtcccg
tggaagagcggccagctggtgcagctgggctggacagccagcgaggacctgctgtgcatc
caggaggatggcactgttctcatctacaacctcttctgcgagttcaagcgtcacttcagc
atgggcaatgaggtgctgcagaaccacgtgctggaggcgaaggtcttccacacggagtac
ggcaccggcgtggccatcctcactggagcgcaccgcttctcgttgaccaccaacatcgac
gacctgaagctgcgcaggatgcccgaggtgccaggtctgcagaagccaccctcctgctgg
gctgtgctgacccaggacagagtgaccgtcgtcctgctggcggtcggtccagacctgtac
ctgctggacaacacctcctgctctgtggtgacaccccctggcatgagcccctccgcaggg
gcctacctgcagatggccgtgtccttcaactaccgctgcctggcgctcttcactgacact
ggctacctgtggatggggttggccacgctcaaggacaagctctgcgagttcaacagcacc
atccgctccgcacccaagcagatggtttggtgcacgcgtccccgcagccggcagcgcgcc
gtggtgctggcctgggaccggcagctgatggtggctgggaattccacggagtgcatccga
tttgtcctggatgaagactcctacctggtgccggagccagatggggtccggatcttatcc
cgcacctcccatgagttcctgcatgaaatcccagaagccagccaggaaatcttcaaaatc
gcttccatggcaccaggagcactcctgctggaggcacagaaggagtacgagaaggagagc
caaaaggcagatgagtacctgagggagatcaaggaccagaaactgctcccagaagcagtg
agccagtgcatcgaggcagccggctatgagcatgagccggagacccagaagtccctgctg
cgggcagcctcctttgggaagtgcttcatcgacaagttccccccagagagcttcgtgcgc
atgtgccaggacctgcgggtgctcaactccatccgggactaccagatcggcatccccctc
accttcacccaatacaaacgactcaccatcgaggtcttgctggacaggctggtcctgcgg
cggctctaccccctggccatccggatctgtgagtacctgcgcctcccagagatccagggc
gtcagccgcatcctggcccactgggcctgctacaaggtgcagcagaaggacaagtctgac
gaggaggtggcttatgccatcaaccagaagctgggtgacacgccaggcatctcctactct
gagatcgccgcccgagcgtacgactgcggcaggacagagctggccatcaagctgctggag
tacgagccacgctccggggagcaggtcccactgctgctgaagatgaagcggagcaagctg
gccctgagcaaagccatcgagagcggggacacagacctggtctacaccgtcgtgctgcac
ctgaagaacgagctgaaccgtggcaccttcttcatgacgctgcagaaccagccggtggct
ctgagcctctaccgccagttttgcaagcaccaggagcgagagacactgaaggacttgtac
aaccaggacgacaaccaccaggagctcggcaacttccatgtccactccagctactcggag
aagcgcatcgaagggcgggtgggagccctgcagaatgctgtggatgagtactacaaggcc
aagaacgagtttgctgccaaggccacagaggatcagatcaagctcctgcggctccagcga
cacctccaggaggactttgacaagccctacctcgacctctctctgcacaacactgtctcc
actctgatccaggacggtcaccacaagaaagctgagcagctgtacagggagttcaagatc
cccgacaagcggtactggtggctgaagatcagtgccctggccacccgcggggactgggag
gagatggagaagttctccaagagcaagaagtcgcccattgggtacctgccctttgtggag
attgctgtgaagcaccacaaccgctatgaggccaagaagtacgcgccccgtgtcacccct
gagcagcgggtcaaggccttcatcctcgtgggggacctggagcaggcggctgacgctgcc
atcgagcacaagaacgaggctgagatgaacctcgtcctatccaagtgctctgccgccact
gacagcgccgtgatggagaagctgaaccgggctcgtgctcagctcctgaagaagtga
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