Lagopus muta (rock ptarmigan): 125691918
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Entry
125691918 CDS
T09141
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125691918 (DDX60)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125691918 (DDX60)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
125691918 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
125691918
NCBI-ProteinID:
XP_048797838
LinkDB
All DBs
Position
4:complement(5939992..5988926)
Genome browser
AA seq
1825 aa
AA seq
DB search
MNSAEDNLKKAAPYYSNESADSDDNDSECVDSEKINFTATEEDKESESTSDSGEEDAADH
DKEAAVVRMLKEKEEREKEVEDPDHAETYCISTTDEVIWHESENESRDFTVPQNKLDFQN
PEIRKHHEILMKLKQNIWPSLSKASFVSLLKDFVESEFFVIDGDSLFLMFLNEEVQHLTL
FYLIECFLHDFTQKGAKYIIVFFKDVEQMYFQNPQFLFLRTALIEHLKHNTCISVHTEFS
NCFSPQWEIFLQKSYPYFIIISDIGLTSLQTNYLTIFIAHSLSKKINVVHAFGQEYDTLR
VYGYHLQSRWKHRNFFQKYEKDLRCACEAIVRYKEPSMYLYGPLKLNLKSIKNEVYQTVL
LLKKLWPEGSDIRRVICVLTCAVGLKLYSDVLESTRASLGAKLEQSERERSKPLSPEEAS
DLCRMQCLTTVFLLHMPLSQRAQIRIMQSRWTKQVLPLIKMQQMCAHFVLKQLRDTDGWK
LDLTYLPDLNDDSLLRNLAHYYEIEYSEGLEFQKELGEEMDKEYRFLWNAVTKLTVNYDF
GDAFPIRNTSQVFIDHQQTSFRVCGEKIPDIGLIPLKSDLVEEYAGDVLKDLPVLKSDDP
VVTSLAKYKEFDELHHWHSGRLLTEEYERVPCNADARSKDAYERKQIQKLQTFHRLYGST
LEGSTAKFIVCQKDAAGKAAGAVKKTKIRKSKAEIIMEENNRRLKAKEEKKEQEQWKTLQ
IPMEKEIQENLTVGINKLEKFLKTVKSKSVKFSIEISALSACVEAWKKHCRKQGSKPEDL
SSAVQVMRRIHILLEKYQDLLEKSHLQKLSQYLQLLGFENLACTLTGQMREGGDDRSRSN
YDIEVGPARFQLQYMDYYLLREERNDPDPRVEHFIPDTWQRELLDAVDNNESAVIVAPTS
SGKTYASYYCMEKVLKTSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLLDGLVVCGVFTR
DYRHDVMNSQILVTVPQCLEILMLSPHRQSWTKRIQYVIFDEIHCLGGEIGAEVWEHLLV
TIRCPFLALSATISNPDHLTEWLQSVKRYWQCADNKIEGSSTDSEKNSAGKYKGRSTVKE
QKKSYRVRLVLYEERYNDLEKHVCSLTGSDFVIEHFHPCAALTVNHIENYGIPSDLSLSP
RESVQLYDTMVKVWQKWPRAQEMDPEEFVSFKNKVVIKKMDVRKYEQELKKELSNWIVVG
QRQKVNEVLEDLRPRPVDCAEHHKWKQFARFVDKLHEMGKLPAIFFIFGLDLVEKAARNV
FLNLLEKQGNECDPRMEKEKEDIKKKLRKVNKTLMKSENIDIKKVKPSKMESMVMLLSMK
KQLQERLNKLTAIPSMCTYADPKAVDEDTLRKIFYRLRFQRNGYLHQMLARRGIGYHHGS
MAMRERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVFADDSVFLDALNYRQMSGRAG
RRGQDMIGDVFFYDIPLPKVERLIKSNVPQLKGQFPLTISLILRLMLLAAKADDKMDARA
KALSVLKHSLMSFKRERYVGILKMYFMFSLQFLIKEGYLDQEGNPVGFAGLVTHLHYHEP
SNFVLVSFLVKGLFHKLCRPIKEGSTDFSEEVLEKLVLVLANLFGRRYLPACSMAFKHTF
YQSKVFLEDLPEDFADAVNEYNTKVEENFAHFLLTTAKLADMEEEYKLPLSKTDFSSEKW
HSTELASYLMDNTKRISAVSPFACISGMVDDDLFHGENVNKAVLRSLGINVRNCPLLHLK
KYDKQGRSLPLNAYALDFYKHGSLIAVATDNWLNEGDAYYLLKDFVLLIQSIRTSLSELC
DDPNDHVLLAFQKLGEVYESKFNAV
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgcagaagataatttgaagaaggctgctccttattattcaaatgagagtgct
gatagtgatgataacgacagcgagtgtgttgatagtgagaaaataaacttcactgcaact
gaggaagacaaagagagtgagagtacgagtgacagtggtgaggaggatgccgctgatcac
gataaagaagcagctgttgtgcggatgcttaaagaaaaggaagaaagggaaaaagaagtt
gaagacccggatcatgctgaaacttattgtatctcgaccactgatgaagtgatatggcat
gaatcagaaaatgaaagcagagatttcacagttccccagaataaactggatttccaaaac
cctgaaataagaaaacatcatgaaattctgatgaaattgaagcaaaacatttggccatct
ctatcaaaagcatcgtttgtcagtctgttaaaagactttgttgagtctgaattctttgtg
atagatggggattccttatttcttatgttcctaaatgaggaagtacaacatctaacgcta
ttttacctgattgaatgctttctgcatgatttcactcaaaaaggagcaaaatacatcatt
gttttcttcaaggatgtagaacagatgtacttccagaatcctcagtttcttttcttacgt
actgcattaatagaacatctgaagcacaacacgtgcatctccgttcacacagaattttcc
aattgtttttcaccacaatgggagatttttctgcagaaatcctatccatatttcatcatc
atatctgacataggactgacctctctccaaaccaactatctgactatttttattgctcat
tcactgtcaaagaaaatcaatgttgtacatgcttttggacaggaatacgatactcttaga
gtttatggatatcatcttcagagtaggtggaaacacagaaacttttttcaaaagtatgaa
aaagatctgcggtgtgcctgtgaagccatagtcaggtacaaagaaccgtccatgtacctg
tatggacctctcaagctgaacctgaaaagcataaaaaatgaggtttaccagactgtcctt
ctgttgaaaaaactgtggcctgaaggatctgatattcgtcgtgtgatctgcgttcttact
tgtgcagtgggattaaaactgtacagtgatgtgctggaaagtacacgtgcttccttggga
gcaaaactggagcaatcagaaagagaaagaagtaaaccactatctccagaagaagcctct
gacctctgtagaatgcagtgtcttacaacagtatttcttctgcatatgcctctttctcag
agagctcagattaggatcatgcaatctcgctggactaaacaagttttacccttaataaaa
atgcaacagatgtgtgcacattttgttctgaaacagctacgtgatacagatggttggaaa
ctggatttaacttatctgcctgacttaaatgatgattcgctgctcagaaatcttgcacat
tactatgagattgaatactctgaaggattggagttccaaaaggaattgggggaagaaatg
gataaagaatacaggtttttatggaacgccgtaaccaaactgactgtgaactatgatttt
ggagatgctttcccaatacgcaacacttctcaagtatttattgatcaccagcagacatca
tttagagtctgtggtgaaaaaattcctgatataggactaatcccattgaaatctgatctt
gtcgaagaatatgctggtgatgttttgaaagacctacctgttttgaaaagcgatgatcct
gtagttacttcacttgctaagtacaaagaatttgatgagcttcaccactggcattctggc
agactgctgactgaggaatatgaacgagtgccatgcaatgcagatgccaggtccaaagat
gcatatgaaagaaaacaaattcaaaagcttcagacttttcatcgtttgtacggaagcact
ttggaaggtagcactgcaaagtttatcgtatgccaaaaggatgctgcagggaaggctgct
ggtgctgtgaagaagactaaaatacgcaaaagcaaagcagaaataattatggaggaaaac
aacaggcgactgaaagctaaagaagaaaagaaagaacaggagcaatggaaaaccttgcag
ataccaatggagaaggaaatacaagaaaatctgacagttggaattaataaattggaaaag
tttctcaagacagttaaaagtaaatctgtgaaattcagcatagaaatatcagcactgtcg
gcctgtgtagaagcatggaaaaaacactgcagaaaacaaggaagcaaacctgaagactta
agcagtgctgtccaagttatgaggagaattcatatactccttgaaaaatatcaagatctt
ttggagaaatcacacttgcagaagctgagtcagtatctacaacttcttggatttgagaat
ttggcatgtactctgactggccagatgagagaaggaggagatgatcggagtagaagcaac
tatgatattgaggtgggaccagctcgctttcagctgcaatacatggactattacttgctc
agagaagagaggaatgatccagatccccgagtggaacacttcataccagacacgtggcag
cgagagcttcttgatgctgtggataataacgagtctgcagtgatagttgctcccacgtca
tcagggaaaacatatgcttcctattattgcatggagaaagttctgaaaaccagtgatgaa
ggagtagttgtctatgttgctcctacaaaggcacttgtaaaccaagtggtggggtctgta
tacagtcgattcaccaagaaacttctggatggattggtggtgtgtggagtcttcacaaga
gattatcgccatgatgtcatgaattctcagatactagtgactgtgcctcagtgtttagaa
attctgatgctgtctcctcatcgccagagttggaccaaacgaatacaatatgttatattt
gatgagattcattgtctgggtggtgaaattggagcagaggtttgggagcatcttctggta
acaattcggtgcccatttttggctctttctgctactatcagcaatccagatcacctgact
gagtggctacagtctgtgaaaaggtattggcaatgtgctgataataaaatagaaggaagc
tctaccgactcagagaagaattctgcagggaagtataaaggaagatctacagtaaaagaa
cagaaaaaatcataccgtgttagattagtcctgtatgaagaaagatacaatgatttggag
aagcatgtgtgttctctaacgggcagtgattttgtcattgaacattttcacccttgtgct
gcattaacagtcaatcatattgagaactatggtattccttcagatctttccctgtctcca
agggagagcgttcagctgtatgacacaatggtaaaagtctggcagaagtggccaagggca
caggagatggatcctgaggaatttgtctcgttcaagaataaggttgtgataaaaaagatg
gatgtgaggaaatatgaacaggaactgaagaaagagttaagcaactggattgtagttgga
caaagacagaaggtgaatgaggtactggaggacttaaggcccagacctgtggattgtgca
gaacatcacaagtggaagcagtttgcacgctttgttgataaattgcatgaaatgggtaaa
ttgcctgctatattttttatatttggcttagatttagtggaaaaggcagccaggaatgtc
ttcctgaatttgctggaaaaacaaggcaatgaatgtgaccctagaatggagaaggaaaaa
gaagatataaagaagaaattaaggaaagtgaataaaacactaatgaaatctgagaacatc
gatatcaaaaaggtgaaacctagtaaaatggaaagcatggtgatgcttttgtctatgaaa
aaacagctacaggaaagacttaacaagcttactgcgatcccttctatgtgtacttatgct
gatcctaaagcagtggatgaagatactttgaggaagattttttatcgacttaggtttcag
agaaatggctatctgcatcaaatgctggcacggaggggcattgggtatcatcacggatct
atggccatgagggaaaggcaaacggtggagatgcttttcaggctgggatatatcaaggtg
gtcacagctacttcaacactcgctctagggatcaacatgccatgtaggtctgtggtcttt
gctgatgattctgtcttcttagatgcactaaattacagacagatgtcaggacgtgctgga
agacggggacaagatatgattggagatgtgttcttctatgatataccattgcccaaggtt
gaaagacttatcaaatccaatgtacctcaactgaaaggccagtttcctctgactatctcc
ttaatactgagactcatgctgttggctgcaaaggctgatgacaaaatggatgccagagca
aaggcattgtcagtgctgaagcactcgctgatgtcattcaaaagagaaagatatgttgga
atattaaaaatgtattttatgttttctttgcagtttcttatcaaagagggctacttggat
caagaaggtaaccccgtaggttttgctgggcttgtgacacacttacactatcacgaacct
tcaaacttcgtcttagtgagttttcttgtgaaaggtttattccacaaactgtgccggcca
attaaggaaggctcaactgatttctcggaagaagtcctagagaagctagtgcttgttcta
gcaaatctgtttgggagaagatatcttccagcctgctcaatggcatttaaacacacgttt
taccagtccaaggtctttctagaagatctgccagaagactttgcagatgctgtcaatgag
tacaacaccaaggtcgaagaaaactttgctcattttcttctgacaacagctaagctggca
gatatggaagaagaatacaaacttccactgtcaaagacagatttctcatctgaaaaatgg
cacagcactgaactagcatcttatttgatggacaacaccaaacgcatatctgctgtctca
ccttttgcatgtatatccggaatggttgatgatgatctatttcatggggagaatgttaat
aaagctgtactacgctcccttggaattaatgtcagaaactgccccctgcttcatttgaag
aagtatgataaacaaggaagaagcttgccactcaacgcatacgcactagacttctataag
cacggctccttgattgctgtggcaactgataactggttaaatgaaggagatgcctactac
ctccttaaggattttgtactcctgattcagtccatacgaacctcactgagcgaactgtgc
gatgatcccaatgatcatgttctactggcatttcaaaaactcggagaagtctacgaaagt
aaatttaatgcagtctga
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integrated database retrieval system
